Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   KE3_RS01350 Genome accession   NC_021900
Coordinates   268052..269098 (+) Length   348 a.a.
NCBI ID   WP_020916179.1    Uniprot ID   -
Organism   Streptococcus lutetiensis 033     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 263052..274098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KE3_RS01335 (KE3_0273) - 264315..265970 (+) 1656 WP_020916176.1 peptide ABC transporter substrate-binding protein -
  KE3_RS01340 (KE3_0274) - 266083..266997 (+) 915 WP_020916177.1 ABC transporter permease -
  KE3_RS01345 (KE3_0275) - 267009..268040 (+) 1032 WP_020916178.1 ABC transporter permease -
  KE3_RS01350 (KE3_0276) oppD 268052..269098 (+) 1047 WP_020916179.1 ABC transporter ATP-binding protein Regulator
  KE3_RS01355 (KE3_0277) amiF 269098..270030 (+) 933 WP_020916180.1 ABC transporter ATP-binding protein Regulator
  KE3_RS01360 (KE3_0278) - 270196..271149 (-) 954 Protein_265 IS30 family transposase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38686.23 Da        Isoelectric Point: 4.8688

>NTDB_id=60808 KE3_RS01350 WP_020916179.1 268052..269098(+) (oppD) [Streptococcus lutetiensis 033]
MSEETILQVKNLHVDFQTYAGEIKAIRDVNFDLKKGETLAIVGESGSGKSVTTKTLMGLSASNATITGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEAWDRALDLMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDVLIADEPTTALDVTIQAQILNLMKKIQKERGSSIIFITHDLGVVAGMADRVAVMYAGKVIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPQKGDAFAPRNEFALDIDYEEEPPMFKVSDTHYAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=60808 KE3_RS01350 WP_020916179.1 268052..269098(+) (oppD) [Streptococcus lutetiensis 033]
ATGAGTGAAGAAACAATTTTACAAGTTAAAAACCTCCATGTAGATTTCCAAACCTACGCTGGAGAAATTAAAGCCATTCG
CGACGTCAACTTTGACTTGAAGAAAGGCGAAACACTTGCTATCGTAGGTGAATCTGGATCAGGTAAATCTGTAACAACTA
AAACATTAATGGGGTTATCTGCTTCAAATGCTACTATTACAGGTGACATTGACTTTAAAGGTAAAAAACTTACTGAATTA
AAAGAAGACGAATGGATTAAAGTTCGTGGAAATGAAATCGCAATGATTTTCCAAGATCCAATGACGAGTCTTGATCCAAC
AATGAAAATTGGTCAACAAATTGCCGAACCAATCATGATCCACGAAAAAGTTTCAAAACAAGAAGCTTGGGATCGTGCAC
TTGATTTAATGAAGAACGTTGGTATTCCAAATGCAGAAGAACATATCAACGATTACCCACACCAATGGTCTGGTGGTATG
CGTCAACGTGCTGTTATTGCAATCGCGCTTGCTGCTAACCCGGATGTCTTGATTGCTGACGAACCAACAACTGCCTTGGA
TGTTACTATTCAAGCTCAAATTCTTAACTTGATGAAAAAAATTCAAAAAGAACGTGGTTCATCAATCATCTTTATCACCC
ACGACCTTGGTGTTGTTGCTGGTATGGCTGATCGTGTAGCAGTTATGTATGCTGGTAAAGTTATTGAATATGGAACAGTT
GACGAAGTCTTCTACAACCCACAACACCCATATACTTGGGGGTTGTTGAACTCAATGCCAACAACTGATACAGAAGCTGG
TAGCTTACAATCAATTCCAGGTACACCACCAGATCTTCTTAACCCGCAAAAAGGTGATGCTTTTGCACCACGTAACGAAT
TTGCTTTGGATATCGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGACACACACTATGCTGCAACTTGGTTGTTA
GACGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(27-183)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.115

99.713

0.799
  amiE Streptococcus salivarius strain HSISS4

57.31

98.276

0.563
  amiE Streptococcus thermophilus LMG 18311

57.91

96.264

0.557
  amiE Streptococcus thermophilus LMD-9

57.91

96.264

0.557

Multiple sequence alignment