Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LB317_RS10170 Genome accession   NZ_CP083805
Coordinates   2123982..2124377 (-) Length   131 a.a.
NCBI ID   WP_000932697.1    Uniprot ID   A0A7U7PX14
Organism   Staphylococcus argenteus strain 1801221     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2118982..2129377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS10145 (LB317_10155) thiE 2119587..2120228 (-) 642 WP_031787699.1 thiamine phosphate synthase -
  LB317_RS10150 (LB317_10160) thiM 2120230..2121021 (-) 792 WP_031787700.1 hydroxyethylthiazole kinase -
  LB317_RS10155 (LB317_10165) thiD 2121005..2121835 (-) 831 WP_031787701.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LB317_RS10160 (LB317_10170) tenA 2121832..2122518 (-) 687 WP_031787702.1 thiaminase II -
  LB317_RS10165 (LB317_10175) sceD 2122898..2123590 (-) 693 WP_031787703.1 lytic transglycosylase SceD -
  LB317_RS10170 (LB317_10180) ssb 2123982..2124377 (-) 396 WP_000932697.1 single-stranded DNA-binding protein Machinery gene
  LB317_RS10175 (LB317_10185) - 2124571..2125011 (+) 441 WP_000846749.1 YwpF-like family protein -
  LB317_RS10180 (LB317_10190) fabZ 2125068..2125508 (-) 441 WP_000447680.1 3-hydroxyacyl-ACP dehydratase FabZ -
  LB317_RS10185 (LB317_10195) murA 2125542..2126807 (-) 1266 WP_000358013.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  LB317_RS10190 (LB317_10200) - 2126919..2127152 (-) 234 WP_000384521.1 DUF1146 family protein -
  LB317_RS10195 (LB317_10205) - 2127484..2127888 (-) 405 WP_001094393.1 F0F1 ATP synthase subunit epsilon -
  LB317_RS10200 (LB317_10210) atpD 2127908..2129320 (-) 1413 WP_000511140.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15016.10 Da        Isoelectric Point: 5.2398

>NTDB_id=608042 LB317_RS10170 WP_000932697.1 2123982..2124377(-) (ssb) [Staphylococcus argenteus strain 1801221]
MLNKIVIVGRLTKDVQIFEKEERKVATFCVATQRNYKDENGEIVCDYIFCKAFGKLASNIDKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSHNIDNPDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=608042 LB317_RS10170 WP_000932697.1 2123982..2124377(-) (ssb) [Staphylococcus argenteus strain 1801221]
ATGCTAAACAAAATCGTAATAGTTGGAAGACTAACGAAAGATGTACAAATCTTTGAAAAGGAGGAAAGAAAGGTTGCTAC
GTTTTGTGTTGCAACACAACGAAATTATAAAGATGAAAACGGAGAAATCGTTTGTGATTATATTTTTTGCAAAGCATTTG
GCAAGCTAGCGTCAAACATTGATAAGTACACCAATCAAGGTACGCTAGTTGGTATTACAGGTCAAATGAGATCAAGAAAA
TATGATAAAGACGGTCAAACACACTTTGTTACAGAATTATATGTTGAAACTATAAAATTCATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCATAATATAGATAATCCTGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7PX14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

93.893

100

0.939
  ssb Staphylococcus aureus MW2

93.13

100

0.931