Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   LB317_RS07545 Genome accession   NZ_CP083805
Coordinates   1628242..1628943 (-) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain 1801221     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1623242..1633943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS07525 (LB317_07535) rpsT 1624151..1624402 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  LB317_RS07530 (LB317_07540) holA 1624452..1625426 (-) 975 WP_001282558.1 DNA polymerase III subunit delta -
  LB317_RS07535 (LB317_07545) comEC 1625483..1627684 (-) 2202 WP_031787280.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LB317_RS07540 (LB317_07550) - 1627689..1628150 (-) 462 WP_000439693.1 ComE operon protein 2 -
  LB317_RS07545 (LB317_07555) comEA 1628242..1628943 (-) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  LB317_RS07550 (LB317_07560) - 1628983..1629699 (-) 717 WP_031787282.1 class I SAM-dependent DNA methyltransferase -
  LB317_RS07555 (LB317_07565) rsfS 1629702..1630055 (-) 354 WP_001088023.1 ribosome silencing factor -
  LB317_RS07560 (LB317_07570) yqeK 1630056..1630640 (-) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  LB317_RS07565 (LB317_07575) - 1630630..1631199 (-) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  LB317_RS07570 (LB317_07580) yhbY 1631202..1631492 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  LB317_RS07575 (LB317_07585) aroE 1631497..1632303 (-) 807 WP_031787284.1 shikimate dehydrogenase -
  LB317_RS07580 (LB317_07590) yqeH 1632316..1633416 (-) 1101 WP_031787285.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=608031 LB317_RS07545 WP_072324129.1 1628242..1628943(-) (comEA) [Staphylococcus argenteus strain 1801221]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=608031 LB317_RS07545 WP_072324129.1 1628242..1628943(-) (comEA) [Staphylococcus argenteus strain 1801221]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGAAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914