Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LB317_RS02575 Genome accession   NZ_CP083805
Coordinates   563543..564100 (+) Length   185 a.a.
NCBI ID   WP_369821465.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain 1801221     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 558543..569100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB317_RS02550 (LB317_02555) cysE 559744..560391 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  LB317_RS02555 (LB317_02560) cysS 560375..561775 (+) 1401 WP_031787937.1 cysteine--tRNA ligase -
  LB317_RS02560 (LB317_02565) - 561768..562172 (+) 405 WP_031787938.1 Mini-ribonuclease 3 -
  LB317_RS02565 (LB317_02570) rlmB 562180..562926 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LB317_RS02570 (LB317_02575) - 562926..563450 (+) 525 WP_000664733.1 NYN domain-containing protein -
  LB317_RS02575 (LB317_02580) sigH 563543..564100 (+) 558 WP_369821465.1 sigma-70 family RNA polymerase sigma factor Regulator
  LB317_RS02580 (LB317_02585) rpmG 564216..564359 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  LB317_RS02585 (LB317_02590) secE 564415..564597 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  LB317_RS02590 (LB317_02595) nusG 564610..565158 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  LB317_RS02595 (LB317_02600) rplK 565339..565761 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  LB317_RS02600 (LB317_02605) rplA 565969..566661 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  LB317_RS02605 (LB317_02610) rplJ 566933..567433 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  LB317_RS02610 (LB317_02615) rplL 567477..567845 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  LB317_RS02615 (LB317_02620) - 568033..568641 (+) 609 WP_031787940.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 22544.44 Da        Isoelectric Point: 9.6758

>NTDB_id=608009 LB317_RS02575 WP_369821465.1 563543..564100(+) (sigH) [Staphylococcus argenteus strain 1801221]
MSVHNNVKKHSNIVDENEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQCLITS
VKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREIAQLM
NVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=608009 LB317_RS02575 WP_369821465.1 563543..564100(+) (sigH) [Staphylococcus argenteus strain 1801221]
ATATCAGTGCATAATAATGTTAAAAAACACAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAATAACAGATTTGAA
ACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAGAGATACTAATAA
AGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGTTTAATCACTTCA
GTTAAATACGATTACCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATATAAAGTTATATA
TCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGATTTGTCAATTTA
AATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATTGCCCAATTGATG
AATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAAAATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(22-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.022

99.459

0.686
  sigH Staphylococcus aureus MW2

67.935

99.459

0.676