Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LB481_RS16580 Genome accession   NZ_CP083796
Coordinates   3338241..3338837 (-) Length   198 a.a.
NCBI ID   WP_004179217.1    Uniprot ID   A0A085DH59
Organism   Klebsiella pneumoniae strain INF019 isolate INF019     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3333241..3343837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LB481_RS16565 (LB481_16565) helD 3333449..3335503 (-) 2055 WP_023342915.1 DNA helicase IV -
  LB481_RS16570 (LB481_16570) - 3335628..3336074 (+) 447 WP_021312905.1 YccF domain-containing protein -
  LB481_RS16575 (LB481_16575) yccS 3336092..3338227 (+) 2136 WP_002898422.1 YccS family putative transporter -
  LB481_RS16580 (LB481_16580) sxy/tfoX 3338241..3338837 (-) 597 WP_004179217.1 TfoX/Sxy family DNA transformation protein Regulator
  LB481_RS16585 (LB481_16585) sulA 3339186..3339695 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  LB481_RS16590 (LB481_16590) ompA 3340048..3341118 (+) 1071 WP_032737546.1 porin OmpA -
  LB481_RS16595 (LB481_16595) matP 3341249..3341701 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  LB481_RS16600 (LB481_16600) - 3341887..3343644 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22516.11 Da        Isoelectric Point: 10.0350

>NTDB_id=607975 LB481_RS16580 WP_004179217.1 3338241..3338837(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF019 isolate INF019]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=607975 LB481_RS16580 WP_004179217.1 3338241..3338837(-) (sxy/tfoX) [Klebsiella pneumoniae strain INF019 isolate INF019]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085DH59

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51