Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NMD38_RS22685 Genome accession   NZ_CP100962
Coordinates   4636380..4637789 (+) Length   469 a.a.
NCBI ID   WP_001188777.1    Uniprot ID   Q32A39
Organism   Escherichia coli strain ET358     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4631380..4642789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD38_RS22670 (NMD38_22515) typA 4631428..4633251 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  NMD38_RS22675 (NMD38_22520) glnA 4633624..4635033 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  NMD38_RS22680 (NMD38_22525) glnL 4635319..4636368 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  NMD38_RS22685 (NMD38_22530) luxO 4636380..4637789 (+) 1410 WP_001188777.1 nitrogen regulation protein NR(I) Regulator
  NMD38_RS22690 (NMD38_22535) yshB 4637901..4638011 (+) 111 WP_000893994.1 YshB family small membrane protein -
  NMD38_RS22695 (NMD38_22540) hemN 4638240..4639613 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  NMD38_RS22700 (NMD38_22545) yihI 4639802..4640308 (-) 507 WP_001351964.1 Der GTPase-activating protein YihI -
  NMD38_RS22705 (NMD38_22550) - 4640427..4640593 (-) 167 Protein_4434 hypothetical protein -
  NMD38_RS22710 (NMD38_22555) yihA 4640890..4641522 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52254.74 Da        Isoelectric Point: 6.4561

>NTDB_id=607893 NMD38_RS22685 WP_001188777.1 4636380..4637789(+) (luxO) [Escherichia coli strain ET358]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=607893 NMD38_RS22685 WP_001188777.1 4636380..4637789(+) (luxO) [Escherichia coli strain ET358]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAGGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCTCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGCCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GTTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACGCTTCTTGCGCAGTGGGCAGACAGAGCGCTACGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACTCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32A39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392