Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LAZ98_RS18395 Genome accession   NZ_CP083764
Coordinates   3603145..3603834 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DMB07     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598145..3608834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ98_RS18360 (LAZ98_18360) - 3598343..3598825 (-) 483 WP_031379255.1 flagellar protein FlgN -
  LAZ98_RS18365 (LAZ98_18365) flgM 3598840..3599106 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LAZ98_RS18370 (LAZ98_18370) - 3599176..3599595 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  LAZ98_RS18375 (LAZ98_18375) comFC 3599669..3600358 (-) 690 WP_201741798.1 phosphoribosyltransferase family protein Machinery gene
  LAZ98_RS18380 (LAZ98_18380) - 3600364..3600648 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  LAZ98_RS18385 (LAZ98_18385) comFA 3600706..3602091 (-) 1386 WP_104842867.1 DEAD/DEAH box helicase Machinery gene
  LAZ98_RS18390 (LAZ98_18390) - 3602199..3603047 (-) 849 WP_003151387.1 DegV family protein -
  LAZ98_RS18395 (LAZ98_18395) degU 3603145..3603834 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LAZ98_RS18400 (LAZ98_18400) degS 3603911..3605074 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LAZ98_RS18405 (LAZ98_18405) - 3605297..3605944 (+) 648 WP_060657503.1 YigZ family protein -
  LAZ98_RS18410 (LAZ98_18410) - 3605949..3606980 (+) 1032 Protein_3582 LCP family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=607857 LAZ98_RS18395 WP_003219701.1 3603145..3603834(-) (degU) [Bacillus velezensis strain DMB07]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=607857 LAZ98_RS18395 WP_003219701.1 3603145..3603834(-) (degU) [Bacillus velezensis strain DMB07]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCGTTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1