Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   NMD42_RS09970 Genome accession   NZ_CP100950
Coordinates   2008449..2009105 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain ET479     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2003449..2014105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD42_RS09935 (NMD42_09860) dcyD 2004329..2005315 (+) 987 WP_001128219.1 D-cysteine desulfhydrase -
  NMD42_RS09940 (NMD42_09865) tcyL 2005330..2005998 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  NMD42_RS09945 (NMD42_09870) tcyN 2005995..2006747 (+) 753 WP_001272987.1 L-cystine ABC transporter ATP-binding protein TcyN -
  NMD42_RS09950 (NMD42_09875) sdiA 2006977..2007699 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  NMD42_RS09955 (NMD42_09880) yecF 2007766..2007990 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  NMD42_RS09960 (NMD42_09885) yecU 2007977..2008153 (-) 177 WP_000590347.1 protein YecU -
  NMD42_RS09965 - 2008236..2008307 (-) 72 Protein_1946 transcriptional regulator -
  NMD42_RS09970 (NMD42_09890) letA 2008449..2009105 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  NMD42_RS09975 (NMD42_09895) uvrC 2009102..2010934 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  NMD42_RS09980 (NMD42_09900) pgsA 2010991..2011539 (+) 549 WP_001160188.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NMD42_RS10000 (NMD42_09920) yecA 2012188..2012853 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=607616 NMD42_RS09970 WP_000611335.1 2008449..2009105(+) (letA) [Escherichia coli strain ET479]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=607616 NMD42_RS09970 WP_000611335.1 2008449..2009105(+) (letA) [Escherichia coli strain ET479]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486