Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   LAZ96_RS12030 Genome accession   NZ_CP083715
Coordinates   2321642..2322040 (-) Length   132 a.a.
NCBI ID   WP_017419379.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMB05     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2316642..2327040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS12005 (LAZ96_12005) - 2316814..2318016 (+) 1203 WP_014416870.1 GTP-binding protein -
  LAZ96_RS12010 (LAZ96_12010) - 2318081..2319217 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  LAZ96_RS12015 (LAZ96_12015) - 2319232..2319666 (+) 435 WP_014416871.1 RDD family protein -
  LAZ96_RS12020 (LAZ96_12020) - 2319783..2320061 (+) 279 WP_263612330.1 YckD family protein -
  LAZ96_RS12025 (LAZ96_12025) - 2320165..2321601 (+) 1437 WP_104843069.1 glycoside hydrolase family 1 protein -
  LAZ96_RS12030 (LAZ96_12030) nin/comJ 2321642..2322040 (-) 399 WP_017419379.1 competence protein ComJ Regulator
  LAZ96_RS12035 (LAZ96_12035) nucA/comI 2322061..2322498 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LAZ96_RS12040 (LAZ96_12040) hxlB 2322829..2323386 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  LAZ96_RS12045 (LAZ96_12045) hxlA 2323383..2324018 (-) 636 WP_123117601.1 3-hexulose-6-phosphate synthase -
  LAZ96_RS12050 (LAZ96_12050) - 2324250..2324612 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=607418 LAZ96_RS12030 WP_017419379.1 2321642..2322040(-) (nin/comJ) [Bacillus velezensis strain DMB05]
MIKSWKPQELAISYHQFTLFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=607418 LAZ96_RS12030 WP_017419379.1 2321642..2322040(-) (nin/comJ) [Bacillus velezensis strain DMB05]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACACTCTTTCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765