Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   LAZ96_RS07435 Genome accession   NZ_CP083715
Coordinates   1428262..1429425 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain DMB05     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1423262..1434425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS07405 (LAZ96_07405) - 1423527..1423946 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  LAZ96_RS07410 (LAZ96_07410) comFC 1424020..1424709 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  LAZ96_RS07415 (LAZ96_07415) - 1424715..1424999 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  LAZ96_RS07420 (LAZ96_07420) comFA 1425057..1426442 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  LAZ96_RS07425 (LAZ96_07425) - 1426550..1427398 (-) 849 WP_003151387.1 DegV family protein -
  LAZ96_RS07430 (LAZ96_07430) degU 1427496..1428185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LAZ96_RS07435 (LAZ96_07435) degS 1428262..1429425 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LAZ96_RS07440 (LAZ96_07440) - 1429648..1430295 (+) 648 WP_007614107.1 YigZ family protein -
  LAZ96_RS07445 (LAZ96_07445) - 1430300..1431553 (+) 1254 WP_065180521.1 LCP family protein -
  LAZ96_RS07450 (LAZ96_07450) - 1431643..1432719 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  LAZ96_RS07455 (LAZ96_07455) tuaH 1432851..1434047 (-) 1197 WP_071182023.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=607404 LAZ96_RS07435 WP_007407484.1 1428262..1429425(-) (degS) [Bacillus velezensis strain DMB05]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=607404 LAZ96_RS07435 WP_007407484.1 1428262..1429425(-) (degS) [Bacillus velezensis strain DMB05]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGTTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951