Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LAZ96_RS07430 Genome accession   NZ_CP083715
Coordinates   1427496..1428185 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain DMB05     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1422496..1433185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAZ96_RS07395 (LAZ96_07395) - 1422694..1423176 (-) 483 WP_003151394.1 flagellar protein FlgN -
  LAZ96_RS07400 (LAZ96_07400) flgM 1423191..1423457 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LAZ96_RS07405 (LAZ96_07405) - 1423527..1423946 (-) 420 WP_061861586.1 TIGR03826 family flagellar region protein -
  LAZ96_RS07410 (LAZ96_07410) comFC 1424020..1424709 (-) 690 WP_199803302.1 phosphoribosyltransferase family protein Machinery gene
  LAZ96_RS07415 (LAZ96_07415) - 1424715..1424999 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  LAZ96_RS07420 (LAZ96_07420) comFA 1425057..1426442 (-) 1386 WP_063636495.1 DEAD/DEAH box helicase Machinery gene
  LAZ96_RS07425 (LAZ96_07425) - 1426550..1427398 (-) 849 WP_003151387.1 DegV family protein -
  LAZ96_RS07430 (LAZ96_07430) degU 1427496..1428185 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LAZ96_RS07435 (LAZ96_07435) degS 1428262..1429425 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  LAZ96_RS07440 (LAZ96_07440) - 1429648..1430295 (+) 648 WP_007614107.1 YigZ family protein -
  LAZ96_RS07445 (LAZ96_07445) - 1430300..1431553 (+) 1254 WP_065180521.1 LCP family protein -
  LAZ96_RS07450 (LAZ96_07450) - 1431643..1432719 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=607403 LAZ96_RS07430 WP_003219701.1 1427496..1428185(-) (degU) [Bacillus velezensis strain DMB05]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=607403 LAZ96_RS07430 WP_003219701.1 1427496..1428185(-) (degU) [Bacillus velezensis strain DMB05]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGTA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1