Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   K3A99_RS07650 Genome accession   NZ_CP083671
Coordinates   1594710..1595780 (-) Length   356 a.a.
NCBI ID   WP_000776425.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25870     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1589710..1600780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A99_RS07610 (K3A99_001504) gcvPA 1589887..1591233 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  K3A99_RS07615 (K3A99_001505) gcvT 1591253..1592344 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  K3A99_RS07620 (K3A99_001506) - 1592503..1593027 (-) 525 WP_001015120.1 shikimate kinase -
  K3A99_RS07625 (K3A99_001507) - 1593017..1593163 (-) 147 WP_001789879.1 hypothetical protein -
  K3A99_RS07630 (K3A99_001508) comGF 1593260..1593757 (-) 498 WP_001825340.1 competence type IV pilus minor pilin ComGF Machinery gene
  K3A99_RS07635 (K3A99_001509) comGE 1593675..1593974 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  K3A99_RS07640 (K3A99_001510) comGD 1593961..1594407 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  K3A99_RS07645 (K3A99_001511) comGC 1594385..1594696 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  K3A99_RS07650 (K3A99_001512) comGB 1594710..1595780 (-) 1071 WP_000776425.1 competence type IV pilus assembly protein ComGB Machinery gene
  K3A99_RS07655 (K3A99_001513) comGA 1595752..1596726 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  K3A99_RS07660 (K3A99_001514) - 1596778..1597401 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  K3A99_RS07665 (K3A99_001515) - 1597398..1597727 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  K3A99_RS07670 (K3A99_001516) - 1597727..1598713 (-) 987 WP_000161315.1 ROK family glucokinase -
  K3A99_RS07675 (K3A99_001517) - 1598710..1598913 (-) 204 WP_000087559.1 YqgQ family protein -
  K3A99_RS07680 (K3A99_001518) - 1598894..1600357 (-) 1464 WP_001017856.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41489.97 Da        Isoelectric Point: 10.1030

>NTDB_id=607228 K3A99_RS07650 WP_000776425.1 1594710..1595780(-) (comGB) [Staphylococcus aureus strain HL25870]
MKLQWINTFKLHSKKRQLSKVQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=607228 K3A99_RS07650 WP_000776425.1 1594710..1595780(-) (comGB) [Staphylococcus aureus strain HL25870]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGTCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTCTCTATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGTTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994