Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   LA331_RS08965 Genome accession   NZ_CP083658
Coordinates   1800912..1801457 (-) Length   181 a.a.
NCBI ID   WP_005233625.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1795912..1806457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS08930 (LA331_08930) - 1797074..1798054 (+) 981 WP_034580764.1 lipase family alpha/beta hydrolase -
  LA331_RS08935 (LA331_08935) rplS 1798120..1798491 (-) 372 WP_004787066.1 50S ribosomal protein L19 -
  LA331_RS08940 (LA331_08940) trmD 1798698..1799438 (-) 741 WP_005233633.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  LA331_RS08945 (LA331_08945) rimM 1799481..1800029 (-) 549 WP_005233631.1 ribosome maturation factor RimM -
  LA331_RS08950 (LA331_08950) rpsP 1800051..1800308 (-) 258 WP_005233629.1 30S ribosomal protein S16 -
  LA331_RS08955 (LA331_08955) - 1800451..1800918 (-) 468 WP_005233627.1 type IV pilin protein -
  LA331_RS08965 (LA331_08965) comE 1800912..1801457 (-) 546 WP_005233625.1 type IV pilin protein Machinery gene
  LA331_RS08970 (LA331_08970) - 1801438..1805874 (-) 4437 WP_005233623.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20046.95 Da        Isoelectric Point: 9.9827

>NTDB_id=607179 LA331_RS08965 WP_005233625.1 1800912..1801457(-) (comE) [Acinetobacter variabilis strain FDAARGOS_1487]
MKNMHNKKWTLRIPQQGFTLIELMVVVVIVAILATIAIPSYQAYARRAIASQAQQEVQKLAEQLERHKGKNFSYLGFEPS
YLYKDNNGNLIGYNTSNAQLNLPLNSSGTAVKYIVSVRDGTDATKLLTNTTALGQRWAIKAESQDPNNFTFLMTSTGIQC
KNMTKANVSYTGCGTGGMNTW

Nucleotide


Download         Length: 546 bp        

>NTDB_id=607179 LA331_RS08965 WP_005233625.1 1800912..1801457(-) (comE) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAAAAATATGCACAATAAGAAGTGGACCCTGCGTATACCACAACAAGGATTTACATTAATTGAATTAATGGTGGTAGT
GGTAATTGTGGCGATTCTTGCCACAATTGCTATCCCGAGTTATCAGGCTTATGCTCGAAGAGCAATCGCTAGTCAGGCAC
AACAGGAAGTGCAAAAGCTAGCAGAGCAGTTAGAGCGCCATAAAGGTAAAAATTTTAGTTATCTGGGTTTTGAGCCTAGT
TATTTATATAAAGATAATAATGGAAATCTTATTGGTTATAATACAAGTAACGCACAATTAAACCTGCCATTAAATAGTTC
AGGAACCGCAGTTAAATATATTGTTTCTGTTCGAGATGGTACAGATGCTACTAAACTTCTAACTAATACTACCGCTTTAG
GACAAAGATGGGCTATTAAAGCAGAAAGCCAAGACCCTAATAATTTTACTTTTCTTATGACTAGTACAGGAATTCAGTGT
AAGAACATGACCAAGGCCAATGTGTCTTATACAGGATGCGGCACAGGAGGTATGAACACATGGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(14-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

56.442

90.055

0.508
  pilY2 Acinetobacter baumannii D1279779

45.562

93.37

0.425