Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LA331_RS07060 Genome accession   NZ_CP083658
Coordinates   1419297..1423814 (-) Length   1505 a.a.
NCBI ID   WP_005236997.1    Uniprot ID   N9MDY1
Organism   Acinetobacter variabilis strain FDAARGOS_1487     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 1414297..1428814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA331_RS07030 (LA331_07030) elsL 1415345..1415857 (-) 513 WP_005236988.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  LA331_RS07035 (LA331_07035) - 1415854..1416291 (-) 438 WP_005236989.1 YbaN family protein -
  LA331_RS07040 (LA331_07040) - 1416380..1417255 (+) 876 WP_005236990.1 DUF1853 family protein -
  LA331_RS07045 (LA331_07045) - 1417370..1417519 (+) 150 WP_004784975.1 entericidin A/B family lipoprotein -
  LA331_RS07050 (LA331_07050) dapE 1417643..1418779 (+) 1137 WP_005236993.1 succinyl-diaminopimelate desuccinylase -
  LA331_RS07055 (LA331_07055) - 1418838..1419296 (-) 459 WP_005236995.1 hypothetical protein -
  LA331_RS07060 (LA331_07060) chpA 1419297..1423814 (-) 4518 WP_005236997.1 Hpt domain-containing protein Regulator
  LA331_RS07065 (LA331_07065) - 1423983..1426052 (-) 2070 WP_005236998.1 methyl-accepting chemotaxis protein -
  LA331_RS07070 (LA331_07070) - 1426099..1426635 (-) 537 WP_004784984.1 chemotaxis protein CheW -
  LA331_RS07075 (LA331_07075) - 1426641..1427009 (-) 369 WP_004784985.1 response regulator -
  LA331_RS07080 (LA331_07080) pilG 1427035..1427418 (-) 384 WP_004784987.1 twitching motility response regulator PilG Regulator
  LA331_RS07085 (LA331_07085) - 1427701..1428345 (+) 645 WP_005237001.1 hypothetical protein -

Sequence


Protein


Download         Length: 1505 a.a.        Molecular weight: 168779.68 Da        Isoelectric Point: 4.2876

>NTDB_id=607173 LA331_RS07060 WP_005236997.1 1419297..1423814(-) (chpA) [Acinetobacter variabilis strain FDAARGOS_1487]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSDPAHQENLKTIRRHFHTLKGSGRMVGAKSA
GEIAWAVEDTLNRVLSGSIQLTPTIQQYAKAVLNIYQFTLYPKFKQVQELDVDLRPVVLLGQQLQQQMTPEPALEELLQL
ADSLTAEGQITGLELGDSAEDQDIIAAIEISTTEFELEKAETEDAARSDVEETVAIFIEEAEEHLETIAKFLRSENEKVQ
DYNALIRAIHTLRGSSSMAQIEEIFEASSKVEHLFKTLLQDEIASTSKETAVLIQYAEFVSDYLHLLRQGDSSKLAAVYA
TFERVWNDYGFAATETETVETQGLVTKLVELEIDLLLDAEFEFDKRAKVDYPEYIQALSEQAAELLAHTDNRAALGIHEF
TTDLKSAYDALLEKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDDTQKTLSELAAFVQQDLEIFAEDNVPAEQ
VSEEISIPEAATTASIDFAALSQRIASDRQYIDSAETQRDFDEDLLNIFLEEADELLVGIDEDLNTWSKKQDDTTSLNNL
MRHLHTLKGGANMITASHIGSISHELESIYERIIRQQIAVTPALIQIIRLVQDNVSDRIQSIRDEGIDYPAVEAISILQN
IQALVAGKAVVASVETSIPVVEFEYAEATADSEQTADEASEEIASKDTNLDLEPALNLEDKQVELTETETLTELVEVVAE
ERSEEDELKSIVEETFLEESEEILDNTEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIENEQVASIAYELETTFEQF
AVYHFNSNAYDGLLQKTLAWLRQAIFQRDYSNFEQIQSSLKKIAYVDVTAQLPERLAKTETLVTENSFEFVEGDGTEPPR
MMGEWVDTGNTDTSHEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIA
KHGSDNSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKSTLSDKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRM
LPRLQRIVRQTSTTLNRPAELIVQNSEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSILLNISRQGT
DVIVSFSDDGKGIDAEKIREKALSQGLIKEDQTLDSEELLQFIFHPGFSTAKSVTQISGRGVGLDVVQSEIKSLGGHVSV
SSEVGKGTTFTIRVPTTVAVSDALMVKVSDQQYAVSLAQIDRIVRIAPSTLETYFNSKDDFFKIDGVNYKLRYLSEFVSN
QPIPRLNNVAHSLPVLLIKGNSGQTIALLVDQLVGSRAQIVVKPIGHQFANIGVVTGATILGNGQVCLILDGQNIARQIH
GTQRVKHMQDQRDGSRSGSARRLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDG
FEVTNLVRHHDIHRDLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQGS

Nucleotide


Download         Length: 4518 bp        

>NTDB_id=607173 LA331_RS07060 WP_005236997.1 1419297..1423814(-) (chpA) [Acinetobacter variabilis strain FDAARGOS_1487]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGACAGTTATCTTGATCAAGATGCAGAAATTCT
TGAAATTTTTGTCGAGGAAATCGAAGAGATTTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGTGATCCGGCTC
ATCAGGAAAACCTGAAAACCATTCGCCGCCATTTTCATACCCTGAAAGGTTCAGGCCGTATGGTGGGGGCTAAATCTGCG
GGTGAAATTGCTTGGGCAGTGGAAGATACCTTAAACCGGGTACTTTCAGGTTCAATCCAGTTAACGCCTACGATTCAACA
GTATGCCAAAGCTGTACTGAATATTTACCAGTTTACTTTATATCCAAAATTCAAACAGGTGCAGGAACTCGATGTTGACC
TGCGTCCAGTCGTGCTTTTAGGTCAGCAATTACAACAACAAATGACACCTGAGCCGGCTTTAGAAGAACTCTTGCAACTG
GCAGACAGTCTGACTGCCGAGGGCCAGATCACAGGTCTTGAGCTAGGTGATTCGGCTGAAGATCAAGATATAATTGCAGC
AATAGAAATAAGCACAACAGAATTTGAGCTTGAAAAAGCCGAAACTGAAGATGCTGCACGCAGTGATGTAGAAGAAACCG
TAGCAATCTTTATCGAGGAAGCCGAAGAGCATCTCGAAACAATTGCCAAGTTCTTGCGTAGCGAAAATGAAAAAGTGCAG
GATTATAATGCATTGATTCGTGCTATTCATACTTTGCGCGGCAGTTCGTCCATGGCACAGATCGAAGAAATCTTCGAGGC
CAGCTCTAAAGTAGAACATCTGTTTAAAACACTGCTTCAGGATGAAATTGCCTCCACTTCAAAAGAAACTGCTGTATTAA
TTCAGTATGCTGAATTTGTCAGCGACTATCTGCATTTATTACGTCAGGGTGATAGCAGCAAACTGGCAGCAGTGTATGCG
ACTTTTGAGCGTGTCTGGAATGATTATGGCTTCGCAGCCACTGAAACGGAAACAGTTGAAACCCAAGGTCTGGTGACCAA
GCTGGTTGAACTGGAGATTGACCTGTTACTGGATGCCGAGTTTGAATTCGATAAACGCGCTAAAGTCGATTATCCAGAAT
ATATTCAGGCTTTAAGCGAGCAGGCTGCCGAGCTGCTTGCACATACAGATAACCGTGCCGCACTGGGTATTCATGAGTTT
ACGACAGATTTAAAATCTGCCTATGATGCCTTACTAGAAAAACCGGTACTGCTGAACAGCGATTATGCCTATGAGCTGTT
TGCCCAGGCACATCAGGAATTCATTCATTTATTCGATACCCTGGCAGCAGGCCAGCGTGTCATTTTAAATGATGATACAC
AAAAAACCTTGAGTGAACTTGCTGCATTCGTACAGCAGGATCTGGAAATCTTTGCCGAAGACAATGTCCCTGCTGAGCAA
GTATCAGAAGAAATTTCTATTCCTGAAGCTGCAACCACAGCCAGCATTGACTTTGCTGCTTTAAGTCAGCGTATTGCCTC
TGACCGCCAGTACATCGACAGCGCAGAAACTCAGCGTGATTTCGATGAGGATCTACTGAATATCTTCCTGGAAGAAGCGG
ATGAATTACTGGTAGGTATTGATGAAGATCTGAATACCTGGAGTAAAAAGCAGGATGATACGACTTCACTTAACAATCTG
ATGCGTCATTTGCACACCTTAAAAGGTGGTGCAAACATGATTACCGCTTCTCATATCGGTTCGATCTCGCACGAACTGGA
AAGTATTTATGAGCGAATCATCCGTCAGCAGATTGCAGTAACGCCTGCTTTGATTCAAATCATTCGTCTGGTGCAAGATA
ACGTTTCTGACCGTATCCAGTCGATCCGTGATGAAGGTATCGATTATCCAGCGGTTGAAGCAATTTCGATTCTGCAAAAT
ATTCAGGCATTGGTGGCTGGTAAAGCTGTTGTAGCTTCAGTAGAAACATCGATTCCTGTTGTCGAATTTGAATATGCAGA
AGCTACTGCTGATTCCGAACAAACAGCGGATGAAGCATCGGAAGAGATTGCATCAAAAGACACAAATTTAGATTTAGAGC
CAGCTCTAAACTTAGAAGATAAACAAGTTGAGCTTACTGAAACAGAAACTTTGACTGAGCTCGTTGAGGTTGTAGCAGAA
GAACGTTCTGAAGAAGATGAACTGAAGTCGATTGTTGAAGAAACCTTCCTGGAAGAATCAGAAGAGATTCTCGACAATAC
CGAAAAACTGCTGAACCAATGGTTTGATCAACGTAGTGACCGTAGCTTATTGCTTCAATTACAACGTGCTGCCCACAGTA
TCAAGGGTGGTGCGCGCATGATTGAAAACGAACAGGTGGCCAGCATTGCGTATGAACTGGAAACCACATTCGAACAGTTT
GCGGTATATCACTTTAACTCGAATGCTTATGATGGCTTGCTGCAAAAAACACTGGCCTGGTTAAGACAAGCTATCTTCCA
GCGTGACTATAGCAATTTTGAACAGATCCAAAGCAGTCTGAAAAAGATTGCTTATGTGGATGTTACTGCGCAGCTGCCGG
AACGTCTGGCTAAAACAGAAACGCTGGTCACTGAAAATAGCTTCGAGTTTGTCGAAGGTGATGGTACTGAGCCACCACGT
ATGATGGGTGAGTGGGTCGATACCGGTAATACCGATACCAGCCACGAGATGATCCGTATCTCTGCTGATCTGGTTGAGAA
GATGATTGACCTGTCAGGTGAGAATGCGATTAACCGTTCGCGTATCGAGATGGACTTAGGCCAACTTGGCAATACCCTGA
ACGAGATGGAACTGGCAATCAAGCGTCTGGCGGATCAGTTGCGCCGAATGGAAGGCGAGCTGGAATCTCAAATTATTGCC
AAACACGGTTCAGACAACTCGCGTTATGCAGACTTTGACCCGCTGGAAATGGACCAATATTCGTCACTGAACCAGTTGTC
CAAGTCGCTTGCGGAATCTGCTTCGGACTTGGTTGACTTCAAGAGCACTCTATCTGACAAGATTCGTGAAACTGAAGGTT
TGTTATTACAACAATCACGGATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGGTACCGTTTGACCGGATG
TTGCCACGTTTACAACGTATCGTACGTCAGACGTCTACGACCTTGAACCGTCCGGCCGAACTGATTGTTCAGAATAGTGA
AGGTGAATTAGACCGTAATATTCTGGAGCGTCTGGTAACGCCATTCGAACATATGCTGCGTAATGCGATTGACCATGGCC
TGGAAGATACAGCAGACCGTATTGCCTTGAACAAACCAGAAGTCGGTTCAATCCTGTTGAATATCAGCCGTCAAGGTACA
GATGTTATCGTCTCATTTAGTGATGATGGTAAAGGTATCGATGCTGAGAAGATTCGTGAGAAAGCACTGAGCCAAGGCCT
GATCAAAGAAGATCAGACCCTGGATTCGGAAGAGTTATTGCAATTCATTTTCCATCCCGGCTTCAGTACCGCTAAATCTG
TAACCCAGATTTCAGGTCGCGGTGTCGGACTGGATGTAGTACAAAGCGAGATCAAGTCGCTGGGCGGTCACGTATCTGTC
AGCTCTGAAGTAGGCAAAGGTACAACCTTCACCATTCGCGTACCGACGACTGTAGCAGTCAGTGATGCCTTGATGGTAAA
AGTGAGCGATCAGCAATATGCCGTTTCTCTGGCGCAAATCGACCGTATTGTACGTATTGCACCATCTACTCTGGAAACTT
ACTTCAACAGTAAAGACGATTTCTTCAAGATTGATGGCGTCAATTACAAATTGCGTTACCTGTCTGAGTTCGTATCGAAT
CAGCCAATTCCACGTTTGAATAATGTGGCACATTCACTGCCAGTATTGTTAATCAAGGGGAATAGTGGTCAAACCATTGC
CTTGCTTGTGGATCAGTTAGTAGGTTCACGTGCACAGATCGTGGTAAAACCAATCGGCCACCAGTTCGCCAATATTGGTG
TAGTGACCGGTGCGACGATTCTTGGTAATGGTCAGGTCTGTCTGATTCTAGATGGTCAGAATATTGCCCGTCAGATCCAT
GGTACACAGCGTGTGAAACACATGCAGGATCAGCGTGATGGTTCACGTTCTGGCAGTGCTCGCCGTCTGGTGATGATCGT
GGATGACTCGGTGACTGTTCGTAAGGTGACCTCGCGTCTGCTTGAGCGTCAGGGCTATGATATTGTCACCGCCAAAGATG
GTGTCGATGCGATTGAGCAGCTTGAAAATGTCCGTCCGGATCTGATGTTGCTGGATATTGAAATGCCGCGTATGGACGGT
TTCGAGGTTACGAACTTGGTTCGTCACCACGATATTCATCGTGACCTGCCAATCATCATGATCACTTCGCGTACCGGTGA
GAAACACCGTGAACGTGCCTTCAGTCTGGGCGTAACCCACTACATGGGTAAACCGTTCCAGGAAGCTGAATTACTGGCGA
ACATTCAACAGTTAATTGCTGAAAAACAGGGGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.564

100

0.613