Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   LA346_RS03300 Genome accession   NZ_CP083627
Coordinates   606862..607482 (-) Length   206 a.a.
NCBI ID   WP_000839905.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FDAARGOS_1508     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 601862..612482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LA346_RS03275 (LA346_03275) recA 602239..603405 (-) 1167 WP_001085463.1 recombinase RecA Machinery gene
  LA346_RS03280 (LA346_03280) cinA 603460..604716 (-) 1257 WP_000642705.1 competence/damage-inducible protein A Machinery gene
  LA346_RS03285 (LA346_03285) brpA 604801..605817 (-) 1017 WP_000239278.1 biofilm formation/cell division transcriptional regulator BrpA -
  LA346_RS03290 (LA346_03290) - 605825..606343 (-) 519 WP_000455534.1 GNAT family N-acetyltransferase -
  LA346_RS03295 (LA346_03295) tsaE 606333..606776 (-) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LA346_RS03300 (LA346_03300) comM 606862..607482 (-) 621 WP_000839905.1 hypothetical protein Regulator
  LA346_RS03305 (LA346_03305) - 607865..608728 (-) 864 Protein_642 helix-turn-helix domain-containing protein -
  LA346_RS10820 - 608917..609087 (+) 171 WP_000742181.1 PhrA family quorum-sensing system peptide -
  LA346_RS03310 (LA346_03310) - 609537..611552 (+) 2016 WP_000732393.1 DUF1430 domain-containing protein -
  LA346_RS03315 (LA346_03315) - 611554..612186 (+) 633 WP_000571415.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23499.67 Da        Isoelectric Point: 9.8826

>NTDB_id=606811 LA346_RS03300 WP_000839905.1 606862..607482(-) (comM) [Streptococcus pneumoniae strain FDAARGOS_1508]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTCKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=606811 LA346_RS03300 WP_000839905.1 606862..607482(-) (comM) [Streptococcus pneumoniae strain FDAARGOS_1508]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCTGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGATTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369