Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   NMD56_RS09425 Genome accession   NZ_CP100901
Coordinates   1961364..1962788 (-) Length   474 a.a.
NCBI ID   WP_000148130.1    Uniprot ID   -
Organism   Escherichia coli strain ET826     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1956364..1967788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD56_RS09395 (NMD56_09350) yeeZ 1956419..1957243 (+) 825 WP_000754762.1 SDR family oxidoreductase -
  NMD56_RS09400 (NMD56_09355) yeeY 1957289..1958218 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  NMD56_RS09405 (NMD56_09360) yoeI 1958433..1958495 (+) 63 WP_010723108.1 membrane protein YoeI -
  NMD56_RS09410 (NMD56_09365) plaP 1958485..1959843 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  NMD56_RS09415 (NMD56_09370) tsuA 1960022..1961080 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  NMD56_RS09420 (NMD56_09375) tsuB 1961094..1961321 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  NMD56_RS09425 (NMD56_09380) sbcB 1961364..1962788 (-) 1425 WP_000148130.1 exodeoxyribonuclease I Machinery gene
  NMD56_RS09430 (NMD56_09385) - 1962970..1963122 (+) 153 Protein_1844 Arm DNA-binding domain-containing protein -
  NMD56_RS09435 (NMD56_09390) yeeA 1963329..1964387 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD56_RS09440 (NMD56_09395) tmaR 1964559..1964888 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD56_RS09445 (NMD56_09400) - 1964989..1965171 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD56_RS09450 (NMD56_09405) - 1965243..1965371 (+) 129 Protein_1848 transposase domain-containing protein -
  NMD56_RS09455 (NMD56_09410) - 1965660..1965752 (-) 93 Protein_1849 DUF957 domain-containing protein -
  NMD56_RS09460 (NMD56_09415) yeeW 1965786..1965980 (-) 195 WP_000988600.1 DUF5983 family protein -
  NMD56_RS09465 (NMD56_09420) cbtA 1965977..1966351 (-) 375 WP_032351760.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  NMD56_RS09470 (NMD56_09425) cbeA 1966440..1966808 (-) 369 WP_001551305.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  NMD56_RS09475 (NMD56_09430) yeeT 1966882..1967103 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  NMD56_RS09480 (NMD56_09435) radC 1967166..1967642 (-) 477 WP_001186773.1 RadC family protein Machinery gene

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54323.60 Da        Isoelectric Point: 5.6054

>NTDB_id=606549 NMD56_RS09425 WP_000148130.1 1961364..1962788(-) (sbcB) [Escherichia coli strain ET826]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=606549 NMD56_RS09425 WP_000148130.1 1961364..1962788(-) (sbcB) [Escherichia coli strain ET826]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584