Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   NMD56_RS09480 Genome accession   NZ_CP100901
Coordinates   1967166..1967642 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain ET826     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1962166..1972642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD56_RS09430 (NMD56_09385) - 1962970..1963122 (+) 153 Protein_1844 Arm DNA-binding domain-containing protein -
  NMD56_RS09435 (NMD56_09390) yeeA 1963329..1964387 (+) 1059 WP_001200891.1 FUSC family protein -
  NMD56_RS09440 (NMD56_09395) tmaR 1964559..1964888 (+) 330 WP_000450409.1 DUF496 family protein -
  NMD56_RS09445 (NMD56_09400) - 1964989..1965171 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  NMD56_RS09450 (NMD56_09405) - 1965243..1965371 (+) 129 Protein_1848 transposase domain-containing protein -
  NMD56_RS09455 (NMD56_09410) - 1965660..1965752 (-) 93 Protein_1849 DUF957 domain-containing protein -
  NMD56_RS09460 (NMD56_09415) yeeW 1965786..1965980 (-) 195 WP_000988600.1 DUF5983 family protein -
  NMD56_RS09465 (NMD56_09420) cbtA 1965977..1966351 (-) 375 WP_032351760.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  NMD56_RS09470 (NMD56_09425) cbeA 1966440..1966808 (-) 369 WP_001551305.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  NMD56_RS09475 (NMD56_09430) yeeT 1966882..1967103 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  NMD56_RS09480 (NMD56_09435) radC 1967166..1967642 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  NMD56_RS09485 (NMD56_09440) - 1967658..1968137 (-) 480 WP_000860087.1 antirestriction protein -
  NMD56_RS09490 (NMD56_09445) - 1968219..1969037 (-) 819 WP_001234629.1 DUF932 domain-containing protein -
  NMD56_RS09495 (NMD56_09450) - 1969137..1969370 (-) 234 WP_001119729.1 DUF905 family protein -
  NMD56_RS09500 (NMD56_09455) - 1969449..1969904 (-) 456 WP_000581504.1 IrmA family protein -
  NMD56_RS09505 (NMD56_09460) - 1969980..1972496 (-) 2517 WP_001348608.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=606550 NMD56_RS09480 WP_001186773.1 1967166..1967642(-) (radC) [Escherichia coli strain ET826]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=606550 NMD56_RS09480 WP_001186773.1 1967166..1967642(-) (radC) [Escherichia coli strain ET826]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392