Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LAU39_RS11840 Genome accession   NZ_CP083602
Coordinates   2214923..2215447 (-) Length   174 a.a.
NCBI ID   WP_224187435.1    Uniprot ID   -
Organism   Macrococcus armenti strain JEK29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2209923..2220447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAU39_RS11815 (LAU39_11815) xpt 2211128..2211712 (-) 585 WP_224187430.1 xanthine phosphoribosyltransferase -
  LAU39_RS11820 (LAU39_11820) - 2212196..2213170 (+) 975 WP_224187431.1 DUF2382 domain-containing protein -
  LAU39_RS11825 (LAU39_11825) - 2213284..2213898 (+) 615 WP_224187432.1 GNAT family N-acetyltransferase -
  LAU39_RS11830 (LAU39_11830) - 2213895..2214458 (-) 564 WP_224187433.1 YfbU family protein -
  LAU39_RS11835 (LAU39_11835) rpsR 2214649..2214891 (-) 243 WP_224187434.1 30S ribosomal protein S18 -
  LAU39_RS11840 (LAU39_11840) ssbA 2214923..2215447 (-) 525 WP_224187435.1 single-stranded DNA-binding protein Machinery gene
  LAU39_RS11845 (LAU39_11845) rpsF 2215472..2215762 (-) 291 WP_224184816.1 30S ribosomal protein S6 -
  LAU39_RS11850 (LAU39_11850) - 2215899..2216216 (-) 318 WP_224187436.1 hypothetical protein -
  LAU39_RS11855 (LAU39_11855) ychF 2216237..2217337 (-) 1101 WP_224187437.1 redox-regulated ATPase YchF -
  LAU39_RS11860 (LAU39_11860) - 2217356..2217544 (-) 189 WP_224187438.1 DUF951 domain-containing protein -
  LAU39_RS11865 (LAU39_11865) - 2217546..2218433 (-) 888 WP_224187439.1 mechanosensitive ion channel family protein -
  LAU39_RS11870 (LAU39_11870) - 2218434..2219297 (-) 864 WP_224187440.1 ParB/RepB/Spo0J family partition protein -
  LAU39_RS11875 (LAU39_11875) - 2219290..2220051 (-) 762 WP_224183705.1 ParA family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19215.80 Da        Isoelectric Point: 4.7065

>NTDB_id=606539 LAU39_RS11840 WP_224187435.1 2214923..2215447(-) (ssbA) [Macrococcus armenti strain JEK29]
MLNRVVLVGRLTKDPEYRVTTSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLHKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVVCDSVQFLEPKNANQSRSNNPSDDYSSYDQGNYDQGSYGQTQGQNYQAANNQPNTSAPSNNPFAN
ATGPVDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=606539 LAU39_RS11840 WP_224187435.1 2214923..2215447(-) (ssbA) [Macrococcus armenti strain JEK29]
TTGCTTAACCGAGTTGTATTAGTTGGTCGTTTAACGAAAGATCCAGAATACAGAGTCACAACATCAGGTGTGTCAGTCGC
TACATTCACTTTAGCAGTAAATCGTACATTTACGAATGCTCAAGGAGAACGTCAAGCTGATTTTATCAACTGTGTCGTAT
TCCGTAAGCAAGCAGAGAATGTTAATAATTTCCTGCATAAAGGTAGCTTAGCTGGGGTTGACGGCAGATTGCAATCCCGT
AGTTATGATAATCAAGAAGGACGCAGAGTATATGTAACTGAAGTTGTTTGTGATTCAGTTCAATTCCTTGAACCGAAAAA
TGCAAATCAATCACGTTCAAATAACCCGTCTGATGACTATTCAAGTTATGACCAAGGTAACTACGATCAAGGAAGTTACG
GTCAAACTCAAGGTCAGAACTATCAAGCAGCAAATAATCAACCAAATACATCAGCACCATCAAACAACCCGTTTGCAAAT
GCAACAGGGCCAGTAGATATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.894

100

0.626
  ssb Latilactobacillus sakei subsp. sakei 23K

52.299

100

0.523
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

60.92

0.362