Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   K9N68_RS39990 Genome accession   NZ_CP083582
Coordinates   622442..622768 (+) Length   108 a.a.
NCBI ID   WP_225938643.1    Uniprot ID   -
Organism   Kovacikia minuta CCNUW1 strain CCNU0001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 617442..627768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N68_RS39990 pilL-C 622442..622768 (+) 327 WP_225938643.1 response regulator Machinery gene
  K9N68_RS02900 (K9N68_02900) - 622839..623060 (+) 222 WP_224343028.1 hypothetical protein -
  K9N68_RS43805 - 623213..623356 (-) 144 WP_390883230.1 ferredoxin-thioredoxin reductase variable chain -
  K9N68_RS02910 (K9N68_02910) - 623707..624684 (+) 978 WP_224343029.1 YbhN family protein -
  K9N68_RS02915 (K9N68_02915) - 624803..626545 (-) 1743 WP_224343030.1 glycosyltransferase family 39 protein -
  K9N68_RS02920 (K9N68_02920) - 626678..627154 (-) 477 WP_224345487.1 MgtC/SapB family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12215.13 Da        Isoelectric Point: 7.1344

>NTDB_id=606353 K9N68_RS39990 WP_225938643.1 622442..622768(+) (pilL-C) [Kovacikia minuta CCNUW1 strain CCNU0001]
MTFNKVGYRVEQARDGQEAWEKLRAGLPCDIVFCDIEMPRMDGLELLSRIQKDSNLSHLPIAMLTSRGADRHRQMASTLG
ASGYFTKPYLEEALLDAAQRMLKGEKLL

Nucleotide


Download         Length: 327 bp        

>NTDB_id=606353 K9N68_RS39990 WP_225938643.1 622442..622768(+) (pilL-C) [Kovacikia minuta CCNUW1 strain CCNU0001]
ATGACCTTCAACAAGGTTGGGTATCGGGTAGAACAGGCGCGCGATGGTCAGGAAGCCTGGGAAAAACTCCGTGCTGGGCT
GCCCTGCGATATCGTGTTCTGCGATATTGAAATGCCCCGTATGGATGGACTGGAACTGCTCTCCCGGATTCAAAAGGACA
GCAATCTGAGCCATTTACCGATCGCCATGCTGACCTCCCGTGGTGCCGATCGTCACCGTCAAATGGCTTCCACCCTGGGA
GCTAGCGGCTACTTCACAAAGCCCTATTTAGAAGAAGCCCTGCTGGATGCTGCTCAGCGCATGCTGAAAGGGGAAAAACT
GCTTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

69.444

100

0.694
  chpA Acinetobacter baumannii strain A118

43.75

88.889

0.389