Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NMD59_RS22590 Genome accession   NZ_CP100883
Coordinates   4644401..4645810 (+) Length   469 a.a.
NCBI ID   WP_274412864.1    Uniprot ID   -
Organism   Escherichia coli strain ET896     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4639401..4650810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMD59_RS22575 (NMD59_22415) typA 4639449..4641272 (-) 1824 WP_000570666.1 ribosome-dependent GTPase TypA -
  NMD59_RS22580 (NMD59_22420) glnA 4641645..4643054 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  NMD59_RS22585 (NMD59_22425) glnL 4643340..4644389 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  NMD59_RS22590 (NMD59_22430) luxO 4644401..4645810 (+) 1410 WP_274412864.1 nitrogen regulation protein NR(I) Regulator
  NMD59_RS22595 (NMD59_22435) yshB 4645922..4646032 (+) 111 WP_000893994.1 YshB family small membrane protein -
  NMD59_RS22600 (NMD59_22440) hemN 4646261..4647634 (-) 1374 WP_000116090.1 oxygen-independent coproporphyrinogen III oxidase -
  NMD59_RS22605 (NMD59_22445) yihI 4647823..4648329 (-) 507 WP_001351964.1 Der GTPase-activating protein YihI -
  NMD59_RS22610 (NMD59_22450) - 4648448..4648614 (-) 167 Protein_4414 hypothetical protein -
  NMD59_RS22615 (NMD59_22455) yihA 4648911..4649543 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52224.72 Da        Isoelectric Point: 6.4561

>NTDB_id=606340 NMD59_RS22590 WP_274412864.1 4644401..4645810(+) (luxO) [Escherichia coli strain ET896]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENACRWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=606340 NMD59_RS22590 WP_274412864.1 4644401..4645810(+) (luxO) [Escherichia coli strain ET896]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAGGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCATTTATCGCTCTGAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGCCAGTTTTACCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGTAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTTATCCGCGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGC
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAACTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GTTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACGCCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACGGTTGCGGAGAGTACTTCGCAAATGCAACCGGAC
AGTTGGGCGACGCTTCTTGCGCAGTGGGCAGACAGAGCGCTACGTTCCGGTCATCAAAATCTGCTTTCCGAAGCGCAGCC
AGAGCTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGCCGCAACACTCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.871

98.934

0.394
  pilR Pseudomonas aeruginosa PAK

39.066

100

0.392