Detailed information NTG0606338

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: NMD59_RS22235
• Genome accession: NZ_CP100883
• Coordinates: 4572860..4573885 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain ET896
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4567860..4578885

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD59_RS22215 (NMD59_22060)	metJ	4568921..4569238 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
NMD59_RS22220 (NMD59_22065)	yiiX	4569422..4570030 (+)	609	WP_000797353.1	YiiX family permuted papain-like enzyme	-
NMD59_RS22225 (NMD59_22070)	rpmE	4570091..4570303 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
NMD59_RS22230 (NMD59_22075)	priA	4570506..4572704 (+)	2199	WP_001355569.1	primosomal protein N'	Machinery gene
NMD59_RS22235 (NMD59_22080)	cytR	4572860..4573885 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
NMD59_RS22240 (NMD59_22085)	ftsN	4573977..4574936 (+)	960	WP_000068828.1	cell division protein FtsN	-
NMD59_RS22245 (NMD59_22090)	hslV	4575029..4575559 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
NMD59_RS22250 (NMD59_22095)	hslU	4575569..4576900 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
NMD59_RS22255 (NMD59_22100)	menA	4576967..4577893 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
NMD59_RS22260 (NMD59_22105)	rraA	4577986..4578471 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
NMD59_RS22265 (NMD59_22110)	zapB	4578556..4578801 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=606338 NMD59_RS22235 WP_000644904.1 4572860..4573885(+) (cytR) [Escherichia coli strain ET896]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=606338 NMD59_RS22235 WP_000644904.1 4572860..4573885(+) (cytR) [Escherichia coli strain ET896]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628