Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   ABEDC_RS03495 Genome accession   NZ_CP083571
Coordinates   723299..727750 (+) Length   1483 a.a.
NCBI ID   WP_374952511.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 718299..732750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS03470 (ABEDC_0722) - 718760..719407 (-) 648 WP_374952510.1 hypothetical protein -
  ABEDC_RS03475 (ABEDC_0723) pilG 719694..720077 (+) 384 WP_004280711.1 twitching motility response regulator PilG Regulator
  ABEDC_RS03480 (ABEDC_0724) - 720102..720470 (+) 369 WP_004280710.1 response regulator -
  ABEDC_RS03485 (ABEDC_0725) - 720476..721012 (+) 537 WP_004280709.1 chemotaxis protein CheW -
  ABEDC_RS03490 (ABEDC_0726) - 721059..723131 (+) 2073 WP_004645841.1 methyl-accepting chemotaxis protein -
  ABEDC_RS03495 (ABEDC_0727) chpA 723299..727750 (+) 4452 WP_374952511.1 Hpt domain-containing protein Regulator
  ABEDC_RS03500 (ABEDC_0728) - 727754..728212 (+) 459 WP_044111490.1 hypothetical protein -
  ABEDC_RS03505 (ABEDC_0729) dapE 728278..729414 (-) 1137 WP_044111491.1 succinyl-diaminopimelate desuccinylase -
  ABEDC_RS03510 (ABEDC_0730) - 729536..729688 (-) 153 WP_004280704.1 entericidin A/B family lipoprotein -
  ABEDC_RS03515 (ABEDC_0731) - 729801..730676 (-) 876 WP_247143041.1 DUF1853 family protein -
  ABEDC_RS03520 (ABEDC_0732) - 730764..731117 (+) 354 Protein_665 YbaN family protein -
  ABEDC_RS03525 (ABEDC_0733) elsL 731243..731776 (+) 534 WP_374952512.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1483 a.a.        Molecular weight: 165947.01 Da        Isoelectric Point: 4.3230

>NTDB_id=606231 ABEDC_RS03495 WP_374952511.1 723299..727750(+) (chpA) [Acinetobacter lwoffii strain ED9-5a]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSNPDHQENLKTIRRHFHTLKGSGRMVGAKSA
GEMAWAVEDTLNRVLSGSIQLTPTVQKFAQAVLNVYQYALYPKFKHVQQLDLDLRPMVLLGQQLQQQISPEPALEELLAL
ADHLTAEGQMTGLELADNEPSEVELTIAPVEVPVRSDIEETVAIFIEEAEEHLDTIATFLRTEDEKSQDYNALIRAIHTL
RGSSSMAQIDQIFEASSKVEHLFKTLLQDEIVSTSKETALLIQYAEFVSDYLHLLRQGNTAKLDAVYATFERVWNDYGFA
VTETNSIQTQGLVSKLVELDIDLLLDAEFEFDKRAQVDYPEYIQALSQQAAELLAHTESRAAQGIHEFTADLKLAYDALL
EKPVLLNSDYGYELFAQAHQEFIHLFDTLAAGQRVILNDEIQKILSELSAFVQQDLEIFAEDTSSQNIELSSEATQVAET
VATGSVDFAGLSQRITADRQQQQSAETNRYFDEELLSIFLEEADELLAGIDEDLNTWSKKQDDTTSLNNLMRHLHTLKGG
ANMIAASHIGLIAHELESIYERVIRQQIAVTPALIQIIRLVQDNISDRIQSIREDGIDYPAPEAIAILQNIQVLVSGQAV
AAVESANTVVEVAEVEATSIREPQLEELATTEQPATDLAEAEELLEISESSEAIEDTPVERSEEDELKSIVEESFLEESE
EILANAEKLLNQWFDQRSDRSLLLQLQRAAHSIKGGARMIDVEEVASIAYELETTFEQFAVYQFNSNAYDGLLQKTLVWL
RQAIFQRDYSGFEPLHSSLKKIAYVDVTAQLPERLAKTDNLVVSTDFGFVEGDGTEPPQMMGEWANSGTSDSNNEMIRIS
ADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQYS
SLNQLSKSLAESASDLVDFKSTLADKIRETEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAEL
IVQNTEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAEKIREK
ALSLDLIKADQVIDQEEILQFIFHPGFSTAKAVTQISGRGVGLDVVQSEIKSLGGHVSVSSELGKGTVFTIRVPTTVAVS
DALMVKVGDQQYAISLAQIDRIVRIAPTTLESYFNSKDDYFKIDGANYKLRYLSEFVGNQPIPRLNNVGHSLPVLLIKGN
SGQTIALLVDQLVGSRAQIVVKPIGQQFANVGVVAGATILGDGQVCLILDGQNVARQIQATQRVKQLNDQRDGSRNSNAR
RLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNLVRHHDIHRDLPIIMI
TSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQR

Nucleotide


Download         Length: 4452 bp        

>NTDB_id=606231 ABEDC_RS03495 WP_374952511.1 723299..727750(+) (chpA) [Acinetobacter lwoffii strain ED9-5a]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGATAGTTATCTTGACCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAGGAAATCGAAGAAATCTTCGTTGAGTTAAATGCTTTATTTCCAGAATGGTTGAGCAATCCAGATC
ATCAAGAAAATCTGAAGACCATTCGCCGCCATTTTCACACCCTGAAAGGTTCAGGCCGCATGGTCGGGGCAAAATCGGCA
GGGGAAATGGCCTGGGCGGTTGAAGATACCTTAAACCGGGTTTTGTCCGGTTCGATTCAGCTAACACCGACGGTACAGAA
ATTTGCCCAAGCGGTACTGAATGTCTATCAATATGCTTTATATCCAAAATTCAAACATGTACAGCAATTGGATCTCGATC
TGCGTCCAATGGTGCTGTTGGGACAACAATTACAACAACAAATTTCGCCTGAACCTGCATTGGAAGAATTACTGGCATTG
GCAGATCATTTGACCGCTGAAGGTCAGATGACAGGTCTTGAGCTTGCAGACAATGAGCCAAGTGAAGTTGAGCTAACAAT
AGCGCCAGTAGAAGTACCGGTTCGCAGTGATATCGAAGAAACTGTGGCGATCTTTATTGAAGAAGCAGAAGAGCATCTGG
ATACGATTGCTACCTTCCTTCGCACTGAAGATGAAAAATCACAAGATTATAATGCGCTGATTCGTGCGATTCATACTTTG
CGCGGCAGTTCATCCATGGCGCAGATTGACCAGATTTTTGAGGCCAGCTCTAAAGTGGAGCATCTGTTCAAAACCTTGCT
ACAAGATGAAATTGTCTCAACCTCAAAAGAAACCGCTTTACTGATTCAGTATGCTGAGTTTGTCAGTGACTATCTGCATT
TGCTACGTCAGGGCAATACTGCAAAACTGGATGCGGTATATGCCACCTTTGAGCGTGTCTGGAATGATTATGGCTTTGCA
GTTACTGAAACCAATAGCATTCAGACGCAAGGTTTGGTGTCTAAACTGGTTGAGCTGGATATTGATCTGTTATTGGATGC
CGAGTTTGAATTTGATAAACGCGCCCAAGTCGATTATCCGGAATATATTCAGGCACTCAGCCAGCAGGCTGCAGAATTGC
TGGCACATACAGAAAGCCGGGCAGCGCAAGGCATTCATGAATTCACTGCCGACCTGAAATTGGCTTATGATGCGCTGCTT
GAAAAGCCAGTGCTGCTAAACAGCGATTATGGTTATGAACTGTTCGCACAGGCGCATCAGGAATTTATTCATTTATTTGA
TACCTTGGCCGCAGGACAGCGCGTCATTCTGAATGATGAGATTCAAAAAATACTCAGCGAACTGTCTGCATTTGTGCAGC
AGGATCTCGAGATATTTGCTGAAGATACTAGCAGTCAGAATATTGAGCTAAGCTCAGAGGCCACACAAGTGGCTGAAACT
GTCGCGACAGGCAGTGTCGATTTTGCTGGTTTGAGCCAACGCATCACTGCGGATCGTCAACAGCAGCAAAGTGCTGAAAC
CAACCGTTATTTTGATGAAGAATTATTAAGTATCTTCCTGGAAGAAGCGGATGAACTGCTCGCAGGCATTGATGAAGATC
TGAATACCTGGAGCAAAAAACAGGACGATACAACCTCGCTGAATAATCTGATGCGTCATTTGCATACCTTAAAAGGTGGT
GCAAACATGATCGCAGCATCGCATATCGGTTTGATTGCGCATGAACTGGAAAGTATTTATGAGCGGGTGATCCGTCAGCA
AATTGCCGTGACACCTGCTTTAATCCAGATTATTCGTCTGGTTCAGGACAACATTTCCGATCGTATTCAATCTATTCGGG
AAGACGGCATTGATTATCCTGCACCAGAAGCGATTGCGATTCTGCAAAATATTCAGGTGCTGGTGTCTGGACAAGCTGTT
GCTGCTGTGGAGAGCGCGAATACTGTAGTTGAAGTTGCAGAGGTCGAAGCGACATCAATTCGTGAACCGCAACTTGAAGA
GTTAGCAACGACTGAACAGCCTGCAACTGATTTGGCAGAAGCTGAAGAATTACTGGAAATCTCTGAGTCTTCTGAGGCTA
TTGAAGACACACCAGTAGAACGTTCTGAAGAAGACGAACTGAAATCCATTGTTGAAGAGTCTTTCCTGGAAGAATCCGAA
GAGATTCTGGCGAATGCCGAGAAGCTCCTCAATCAATGGTTTGATCAGCGTAGTGACCGTAGTTTATTGCTGCAATTACA
GCGTGCCGCCCATAGTATCAAGGGTGGCGCACGTATGATTGATGTTGAAGAAGTGGCCAGTATTGCCTATGAGCTGGAAA
CGACTTTCGAACAGTTTGCGGTCTATCAATTTAACTCGAATGCCTATGACGGCTTATTGCAGAAAACGCTGGTCTGGTTA
AGACAGGCGATTTTCCAGCGCGACTATAGCGGCTTTGAGCCGCTTCACAGCAGTCTGAAAAAGATTGCTTATGTGGACGT
TACTGCGCAATTGCCTGAGCGTCTGGCGAAAACAGATAATCTTGTAGTCAGCACCGACTTCGGCTTTGTTGAAGGTGATG
GTACTGAACCGCCACAGATGATGGGTGAATGGGCGAATAGCGGTACCAGCGATAGTAATAACGAGATGATCCGTATCTCT
GCTGATCTGGTCGAGAAGATGATTGATCTGTCCGGTGAGAACTCGATTAACCGTTCGCGTATCGAGATGGACCTGGGTCA
GCTAGGCAATACCCTGAACGAGATGGAATTGGCGATCAAACGTCTTGCTGATCAGTTACGTCGAATGGAAGGCGAGCTGG
AATCACAGATTATTGCCAAACATGGTTCAGAGAACTCGCGCTATGCCGACTTTGACCCGCTGGAAATGGACCAATATTCG
TCGCTCAACCAGCTGTCCAAGTCACTTGCAGAATCAGCATCGGATTTGGTCGACTTCAAGAGTACGCTGGCCGACAAGAT
TCGCGAAACTGAAGGACTGTTATTGCAACAATCCCGTATTCAGGCCGAGATTCAGGAAAGTCTGATGCGTACCCGTCTGG
TTCCGTTTGACCGGATGTTGCCGCGTTTACAGCGTATTGTGCGTCAAACCTCGACCACCTTGAACCGTCCTGCAGAACTG
ATCGTACAGAATACCGAAGGTGAACTGGATCGTAATATTCTCGAGCGTCTGGTCACACCATTTGAGCATATGCTGCGTAA
TGCGATTGACCATGGCCTGGAAGATACGGCAGATCGTATCGCACTGAACAAGCCGGAAGTGGGTTCGATTGTCTTGAACA
TCAGCCGCCAGGGAACCGATGTAATTGTATCCTTTAGTGATGATGGTAAGGGGATTGATGCAGAGAAGATTCGTGAAAAA
GCGCTGAGTCTGGATCTAATCAAAGCGGATCAAGTCATTGATCAGGAAGAAATCCTGCAATTTATCTTCCATCCTGGTTT
CAGTACCGCGAAAGCAGTGACCCAGATTTCTGGTCGTGGTGTCGGTCTGGATGTGGTACAAAGCGAGATCAAATCACTGG
GCGGCCATGTGTCAGTGAGCTCGGAACTGGGCAAGGGTACGGTCTTTACGATTCGCGTACCGACGACCGTAGCGGTCAGC
GATGCCTTGATGGTGAAAGTGGGCGATCAGCAATATGCGATTTCTCTGGCGCAGATTGACCGAATTGTGCGTATTGCACC
GACCACATTGGAAAGCTATTTCAACAGTAAAGATGACTATTTCAAGATCGATGGCGCAAACTATAAGCTGCGTTATCTGT
CTGAGTTTGTTGGCAACCAGCCGATTCCACGTCTGAATAATGTTGGTCATTCATTGCCGGTGCTGTTGATTAAAGGTAAT
AGTGGTCAAACTATTGCCTTGCTGGTCGATCAGTTGGTCGGTTCACGAGCGCAGATTGTAGTAAAACCGATTGGACAGCA
GTTTGCCAACGTCGGGGTAGTGGCCGGTGCCACGATTCTGGGTGATGGTCAGGTCTGTCTGATTCTCGATGGACAGAATG
TTGCCCGCCAGATTCAGGCGACACAGCGTGTCAAACAGCTGAATGATCAGCGTGATGGTTCGCGTAATTCAAATGCACGT
CGTCTGGTGATGATTGTCGATGACTCGGTGACTGTACGTAAAGTGACGTCGCGTCTGCTTGAACGTCAAGGCTATGATAT
TGTCACTGCCAAAGATGGCGTAGATGCGATCGAGCAGCTTGAAAACGTCAGACCGGATCTGATGTTGCTGGATATCGAAA
TGCCGCGCATGGACGGTTTCGAAGTGACCAATCTGGTTCGTCACCATGATATTCACCGTGACTTGCCGATTATTATGATT
ACCTCACGTACCGGTGAGAAGCATCGTGAACGTGCATTTAGCTTGGGCGTAACGCACTATATGGGTAAACCGTTCCAGGA
AGCGGAACTGTTGGCCAATATCCAGCAACTGATTGCTGAAAAACAGAGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.421

100

0.624