Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABEDC_RS01975 Genome accession   NZ_CP083571
Coordinates   416871..417506 (-) Length   211 a.a.
NCBI ID   WP_004281524.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411871..422506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01945 (ABEDC_0404) - 412102..412740 (+) 639 WP_004281529.1 phospholipid-binding protein MlaC -
  ABEDC_RS01950 (ABEDC_0405) - 412756..413046 (+) 291 WP_004281528.1 STAS domain-containing protein -
  ABEDC_RS01955 (ABEDC_0406) - 413198..414430 (-) 1233 WP_004730312.1 transposase -
  ABEDC_RS01960 (ABEDC_0407) - 414678..415691 (-) 1014 WP_004281527.1 CorA family divalent cation transporter -
  ABEDC_RS01965 (ABEDC_0408) - 415844..416434 (+) 591 WP_004281526.1 TIGR00730 family Rossman fold protein -
  ABEDC_RS01970 (ABEDC_0409) - 416465..416866 (+) 402 WP_253137912.1 NUDIX domain-containing protein -
  ABEDC_RS01975 (ABEDC_0410) comF 416871..417506 (-) 636 WP_004281524.1 ComF family protein Machinery gene
  ABEDC_RS01980 (ABEDC_0411) recG 417493..419538 (-) 2046 WP_004645042.1 ATP-dependent DNA helicase RecG -
  ABEDC_RS01985 (ABEDC_0412) - 419572..420375 (+) 804 WP_004281522.1 NAD-dependent epimerase/dehydratase family protein -
  ABEDC_RS01990 (ABEDC_0413) - 420586..421818 (+) 1233 WP_004730312.1 transposase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24417.59 Da        Isoelectric Point: 9.4810

>NTDB_id=606228 ABEDC_RS01975 WP_004281524.1 416871..417506(-) (comF) [Acinetobacter lwoffii strain ED9-5a]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHF
QNLLAGALLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPITRLKQHSQKGLSRLERIEDIQSQF
QINIISKLRYRRVLIIDDVVTTGSSIRALSQTLERLGCQKIYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=606228 ABEDC_RS01975 WP_004281524.1 416871..417506(-) (comF) [Acinetobacter lwoffii strain ED9-5a]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTGCAGCCCTGTCAGCTCTGTCTGACGGACCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCCTACCCGATGGATCGTTTGATTCAACTGTTTAAATATGAACAGAAACTGCATTTT
CAAAATTTACTGGCAGGTGCGCTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCCGAGCGCGGTTATAATCAATCTCTGGTGCTGGCCAAACATGTGGCGAAACAACTGAATGTACCCATCTGGC
AACCGATTACCCGACTAAAACAACACTCACAGAAAGGTCTAAGCCGACTGGAAAGGATTGAAGATATCCAGTCGCAATTC
CAGATCAACATCATTTCAAAGCTACGGTATCGTCGGGTGCTGATTATTGATGATGTCGTCACGACTGGCAGCTCGATTCG
GGCACTCAGCCAAACACTTGAACGATTGGGCTGCCAAAAAATTTATGCAGCCTGTCTGGCAGGCGCGCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

59.42

98.104

0.583
  comF Acinetobacter baumannii D1279779

58.937

98.104

0.578