Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   N134_RS00040 Genome accession   NC_021872
Coordinates   9312..9875 (+) Length   187 a.a.
NCBI ID   WP_003665236.1    Uniprot ID   A0A073JQA9
Organism   Limosilactobacillus reuteri TD1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 10418..11758 9312..9875 flank 543


Gene organization within MGE regions


Location: 9312..11758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N134_RS00040 (N134_00040) ssb 9312..9875 (+) 564 WP_003665236.1 single-stranded DNA-binding protein Machinery gene
  N134_RS00045 (N134_00045) rpsR 9909..10145 (+) 237 WP_003665240.1 30S ribosomal protein S18 -
  N134_RS00050 (N134_00050) - 10418..11758 (+) 1341 WP_003664144.1 IS4-like element ISLre1 family transposase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20575.28 Da        Isoelectric Point: 4.4652

>NTDB_id=60617 N134_RS00040 WP_003665236.1 9312..9875(+) (ssb) [Limosilactobacillus reuteri TD1]
MLNRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQSGVQQPFNNNQQSFGAQAPQYGSQPQPGNNAPQSNPSPSMDNGFDPN
QNAGNQFPGSSDDGGQSIDLADDELPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=60617 N134_RS00040 WP_003665236.1 9312..9875(+) (ssb) [Limosilactobacillus reuteri TD1]
ATGCTTAATCGTGCAGTCTTAACTGGGCGTTTAACAAGAGATCCCGAGTTGCGGTACACAACCAGCGGGACAGCAGTTGT
TTCATTTACGTTAGCTGTTGATCGGCAATTCCGAAACCAAAATGGTGATCGTGATGCTGACTTTATCAATTGCGTTATTT
GGCGTAAATCCGCTGAAAACTTTAGTAACTTTACGCATAAGGGTTCACTTGTTGGAATTGAAGGGCGTATTCAAACCCGA
AATTATGAAAACCAACAGGGTAACCGTGTATATGTTACCGAAGTTGTTGTAGATAACTTTGCATTGTTAGAACCTCGTCA
AAATGGTGGTATGAACCAATCAGGCGTTCAACAGCCATTTAACAATAACCAACAATCGTTTGGTGCTCAGGCTCCACAAT
ATGGCAGTCAACCACAACCTGGAAATAATGCTCCTCAAAGTAATCCGTCACCAAGTATGGACAATGGTTTCGATCCCAAT
CAAAATGCTGGCAACCAGTTCCCTGGAAGCAGTGATGATGGTGGTCAATCCATTGATTTAGCTGATGACGAATTACCATT
CTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A073JQA9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.574

100

0.599
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.895

100

0.487

Multiple sequence alignment