Detailed information NTG0606065

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: NLL86_RS18475
• Genome accession: NZ_CP100660
• Coordinates: 4049144..4050427 (-)
• Length: 427 a.a.
• NCBI ID: WP_054883550.1
• Uniprot ID: A0A923K461
• Organism: Pseudomonas fluorescens strain ZL22
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4044144..4055427

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NLL86_RS18465 (NLL86_18465)	hupB	4046158..4046430 (-)	273	WP_003250246.1	nucleoid-associated protein HU-beta	-
NLL86_RS18470 (NLL86_18470)	lon	4046582..4048978 (-)	2397	WP_254480679.1	endopeptidase La	-
NLL86_RS18475 (NLL86_18475)	clpX	4049144..4050427 (-)	1284	WP_054883550.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
NLL86_RS18480 (NLL86_18480)	clpP	4050536..4051177 (-)	642	WP_003259400.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
NLL86_RS18485 (NLL86_18485)	tig	4051269..4052582 (-)	1314	WP_254480680.1	trigger factor	-
NLL86_RS18490 (NLL86_18490)	-	4052831..4053130 (-)	300	WP_060507988.1	DUF6388 family protein	-
NLL86_RS18515 (NLL86_18515)	folD	4054112..4054966 (+)	855	WP_254480681.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46897.53 Da
• Isoelectric Point: 4.7906

>NTDB_id=606065 NLL86_RS18475 WP_054883550.1 4049144..4050427(-) (clpX) [Pseudomonas fluorescens strain ZL22]
MTDTRNGEDSGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLSVAVYNHYKRLNQRDKKGDEVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTKGGIGFGAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALMQILTEPKNALTKQYAKLFEMESVDLEFRTDALKAVARKALERKTGARGLRSILEGVLLDTMYEIPSQKDVSKVVID
ESVIEGTSQPLMIYENSEPQAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=606065 NLL86_RS18475 WP_054883550.1 4049144..4050427(-) (clpX) [Pseudomonas fluorescens strain ZL22]
ATGACTGACACCCGTAACGGCGAGGACAGCGGCAAATTGCTTTATTGCTCCTTCTGCGGCAAAAGCCAGCACGAAGTGCG
CAAACTGATTGCCGGGCCCTCGGTATTTATCTGCGACGAGTGCGTCGACCTGTGCAACGACATCATCCGTGAGGAGGTGC
AGGAAGCCCAGGCCGAGAGCAGCGCGCACAAATTACCTTCGCCGAAAGAAATCAGCGGCATCCTGGACCAGTACGTCATC
GGTCAGGAGCGCGCGAAGAAGGTGCTCTCGGTAGCGGTGTACAACCACTACAAGCGCCTGAACCAGCGTGACAAGAAGGG
CGACGAAGTCGAACTCGGCAAAAGCAACATCCTGCTCATCGGGCCTACCGGCTCGGGCAAGACCCTGCTCGCCGAAACCC
TTGCGCGACTGTTGAACGTTCCGTTCACCATCGCTGACGCCACCACCCTGACCGAAGCCGGTTATGTGGGTGAGGACGTC
GAGAACATCATTCAGAAACTGCTGCAGAAGTGCGACTACGACGTGGAAAAGGCCCAGATGGGCATCGTCTACATCGACGA
GATCGACAAGATCTCGCGCAAGTCGGACAACCCGTCCATTACCCGTGACGTTTCGGGTGAAGGCGTGCAGCAGGCGCTGC
TGAAGCTGATCGAGGGCACCGTTGCTTCGGTTCCGCCGCAGGGCGGCCGCAAGCACCCGCAACAGGAATTCCTGCAGGTT
GATACCCGCAACATCCTGTTCATCTGCGGTGGCGCCTTCTCCGGCCTGGAAAAGGTCATCCAGAACCGCTCCACCAAGGG
TGGCATCGGTTTTGGCGCCGAAGTACGCAGCAAGGAAGAGGGCAAGAAGGTCGGCGAATCGCTGCGCGAAGTCGAGCCGG
ACGATCTGGTCAAGTTTGGCCTGATCCCCGAGTTCGTGGGGCGCCTGCCGGTTCTGGCGACCCTCGACGAGCTGGACGAG
GCTGCACTGATGCAGATCCTCACCGAGCCGAAGAATGCCCTGACCAAGCAGTACGCCAAGCTGTTCGAGATGGAAAGCGT
GGACCTCGAGTTCCGCACCGACGCCCTCAAGGCCGTCGCACGCAAGGCCCTGGAGCGTAAGACTGGCGCCCGTGGCTTGC
GTTCGATCCTCGAAGGCGTGCTGCTCGACACCATGTACGAGATTCCTTCGCAGAAGGATGTCAGCAAGGTGGTGATCGAC
GAGAGCGTCATCGAAGGCACCTCGCAGCCGCTGATGATCTACGAAAACAGCGAGCCGCAAGCCAAGGCCGCACCCGACGC
CTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

3D structure

• AlphaFold DB: A0A923K461

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.29	94.379	0.578
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.683	94.614	0.536