Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NLL86_RS08880 Genome accession   NZ_CP100660
Coordinates   1931346..1931948 (+) Length   200 a.a.
NCBI ID   WP_054884114.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1926346..1936948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS08865 (NLL86_08865) - 1928421..1928756 (+) 336 WP_028692865.1 YbaB/EbfC family nucleoid-associated protein -
  NLL86_RS08870 (NLL86_08870) proC 1928842..1929636 (-) 795 WP_254484465.1 pyrroline-5-carboxylate reductase -
  NLL86_RS08875 (NLL86_08875) - 1929976..1931289 (+) 1314 WP_254484467.1 MFS transporter -
  NLL86_RS08880 (NLL86_08880) recR 1931346..1931948 (+) 603 WP_054884114.1 recombination mediator RecR Machinery gene
  NLL86_RS08885 (NLL86_08885) - 1931984..1932532 (-) 549 WP_009683910.1 adenine phosphoribosyltransferase -
  NLL86_RS08890 (NLL86_08890) fnrA 1932588..1933322 (-) 735 WP_060508220.1 Crp/Fnr family transcriptional regulator FnrA -
  NLL86_RS08895 (NLL86_08895) hemN 1933508..1934890 (-) 1383 WP_254484469.1 oxygen-independent coproporphyrinogen III oxidase -
  NLL86_RS08900 (NLL86_08900) - 1934974..1935657 (-) 684 WP_254484471.1 sulfite exporter TauE/SafE family protein -
  NLL86_RS08905 (NLL86_08905) ccoS 1935650..1935865 (-) 216 WP_254484473.1 cbb3-type cytochrome oxidase assembly protein CcoS -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21599.78 Da        Isoelectric Point: 6.0019

>NTDB_id=606044 NLL86_RS08880 WP_054884114.1 1931346..1931948(+) (recR) [Pseudomonas fluorescens strain ZL22]
MSFSPLIRQLIDALRTLPGVGQKTAQRMALQLLERDRSGGLRLAQALSQAMEGVGHCRQCRTLTEQELCPQCSDPRRDDT
QLCVVEGPMDVYAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGVPQLMARIEEQGSFTEVILATNPTVEGEATAHYIAQLL
NEKGLVASRIAHGVPLGGELELVDGGTLAHAFAGRKPISL

Nucleotide


Download         Length: 603 bp        

>NTDB_id=606044 NLL86_RS08880 WP_054884114.1 1931346..1931948(+) (recR) [Pseudomonas fluorescens strain ZL22]
ATGAGCTTCAGCCCCCTGATCCGCCAACTGATCGACGCCCTGCGCACCCTCCCGGGCGTCGGCCAGAAAACCGCCCAGCG
CATGGCCCTGCAGCTGCTCGAACGTGACCGCAGCGGCGGCCTGCGCCTGGCCCAGGCGTTGAGCCAGGCCATGGAAGGGG
TAGGGCATTGCCGCCAGTGCCGGACCCTGACCGAGCAGGAGCTGTGCCCGCAGTGCAGCGACCCGCGCCGTGACGACACG
CAGCTGTGTGTGGTGGAAGGGCCAATGGATGTGTACGCGGTGGAGCAGACCGGCTATCGCGGGCGTTACTTCGTGCTCAA
GGGGCACTTGTCGCCGCTCGATGGCCTGGGGCCAGAGGCCATCGGTGTGCCGCAGCTGATGGCGCGGATCGAGGAGCAGG
GCAGCTTCACCGAGGTGATCCTGGCGACCAACCCGACCGTGGAAGGTGAGGCGACCGCGCATTACATCGCCCAGTTGCTG
AACGAGAAAGGGCTGGTGGCGTCGCGGATCGCCCATGGCGTACCGCTGGGCGGGGAGCTGGAGCTGGTTGACGGCGGAAC
GCTGGCCCATGCCTTTGCCGGGCGCAAGCCGATCTCGCTGTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47

100

0.47
  recR Bacillus subtilis subsp. subtilis str. 168

46.701

98.5

0.46
  recR Streptococcus pneumoniae R6

37.245

98

0.365