Detailed information NTG0606001

Bioinformatically predicted

Overview

• Name: pilB
• Type: Machinery gene
• Locus tag: LAJ19_RS13785
• Genome accession: NZ_CP083455
• Coordinates: 2849711..2852389 (+)
• Length: 892 a.a.
• NCBI ID: WP_225476308.1
• Uniprot ID: -
• Organism: Deinococcus taeanensis strain TS293
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2844711..2857389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAJ19_RS13760 (LAJ19_13760)	-	2845719..2846132 (-)	414	WP_225476303.1	isochorismatase family protein	-
LAJ19_RS13765 (LAJ19_13765)	-	2846173..2847081 (-)	909	WP_225476304.1	NADP-dependent oxidoreductase	-
LAJ19_RS13770 (LAJ19_13770)	-	2847500..2848288 (-)	789	WP_225476305.1	enoyl-ACP reductase	-
LAJ19_RS13775 (LAJ19_13775)	pgeF	2848426..2849157 (+)	732	WP_225476306.1	peptidoglycan editing factor PgeF	-
LAJ19_RS13780 (LAJ19_13780)	-	2849154..2849660 (+)	507	WP_225476307.1	YqeG family HAD IIIA-type phosphatase	-
LAJ19_RS13785 (LAJ19_13785)	pilB	2849711..2852389 (+)	2679	WP_225476308.1	type II/IV secretion system protein	Machinery gene
LAJ19_RS13790 (LAJ19_13790)	pilT	2852427..2853722 (+)	1296	WP_225476309.1	type IV pilus twitching motility protein PilT	Machinery gene
LAJ19_RS13795 (LAJ19_13795)	-	2853799..2855103 (-)	1305	WP_225476310.1	thymidine phosphorylase	-

Sequence

Protein

• Length: 892 a.a.
• Molecular weight: 97400.73 Da
• Isoelectric Point: 4.9842

>NTDB_id=606001 LAJ19_RS13785 WP_225476308.1 2849711..2852389(+) (pilB) [Deinococcus taeanensis strain TS293]
MALSIGDRRLGAILLEQGYVNDTDLQKALVRHAEVGGRLAEILIDSGLVGEKRIARAIEEALGIPLVNLLVITPEAPAMQ
TIRAQTALSVQAFPFALDGSTLRVAIVDPLSSVAIEALEDDSGLNIEVYQALRDQVLWAIATYYPELKLTAELPAEAEGG
PAGGMMGQRLIARGLITDAQLQVALDAQQQTGEPLGATLIAQKAITEDQLYEVLAEQSGAVFLRNLRDFQPSEDVLGSML
RADALRLSAVPVDEGEQGVTVVASDPRKREDIEALVGRSVQIVLAKPRDIEMLIERFYPQRGRLGEQMVQQGTLSREQLR
EALQVQAREGRVKALGEVIVSLGFANAEEIDNALQKQHAGGGRLEDTLVQSGKLSPEMLARSLAAQLGYEFLDPVQNPPD
SKVALLIPETTARRYSVVPVRLQGEALVVAMKDPRNVFALDDLKLISGREIIPAVMAEKDIIRLIERYFGNRDMADLNQK
LVQESRQRENASKRQDDMDLSAGLDDNAVVRVVDNIIREAALQEASDIHIEPTEMSLRVRYRVDGVLREQNELPKGSSQS
ILARIKIMGSLDISERRIPQDGRIRFKKGSIDLDLRLSTLPTVYGEKAVMRLLQKASNIPEVEQLGFSEHNYQRYLDTIH
KPNGIFLVTGPTGSGKSFTSFSTLKRIAVPEKNTTTIEDPVEYEIPGIIQSQVNPVAGMTFARALRAFLRQDPDIIFVGE
IRDTETAKIAVEAALTGHLVLATLHTNDAPGAIVRLEEMGVEHFNIGAAVVGVVAQRLVRKVCPDCKAPTNADPDVLRRL
GITERDLKGAQLMRGAGCNRCGGTGYKGRMGIHELMVIDEPLRVAIGSGKNATEITQVATEQSGMKTLRQDGIEKALLGI
TTLEEVLAVTSK

Nucleotide

• Length: 2679 bp

>NTDB_id=606001 LAJ19_RS13785 WP_225476308.1 2849711..2852389(+) (pilB) [Deinococcus taeanensis strain TS293]
ATGGCACTTTCTATCGGTGACCGGCGCCTGGGCGCCATCCTGCTCGAACAGGGGTACGTGAACGACACCGACCTGCAAAA
GGCGCTGGTGCGTCACGCCGAGGTCGGCGGCCGACTGGCCGAGATTCTGATCGACTCGGGCCTGGTGGGCGAGAAACGCA
TCGCGCGTGCCATCGAGGAGGCGCTGGGCATTCCGCTGGTGAACCTGCTTGTCATCACGCCCGAAGCGCCGGCCATGCAG
ACCATCCGCGCGCAGACGGCCCTGAGCGTGCAGGCCTTCCCGTTCGCGCTGGACGGCAGCACGCTGCGCGTGGCGATCGT
GGACCCGCTGTCCAGCGTGGCGATCGAGGCGCTGGAGGACGACAGCGGCCTGAACATCGAGGTCTACCAGGCGCTGCGCG
ACCAGGTGCTGTGGGCCATCGCCACGTACTACCCGGAGTTGAAGCTCACGGCCGAGCTGCCAGCCGAGGCGGAAGGCGGC
CCCGCAGGCGGCATGATGGGCCAGCGCCTGATTGCGCGCGGCCTGATCACCGACGCGCAGCTGCAGGTGGCGCTTGACGC
CCAGCAGCAGACCGGAGAGCCGCTGGGCGCCACCCTGATCGCCCAGAAGGCCATCACGGAGGATCAGCTGTACGAGGTGC
TGGCCGAACAGTCCGGCGCGGTGTTCCTGCGCAACCTGCGTGACTTCCAGCCCAGCGAGGACGTGCTGGGCAGCATGCTG
CGCGCCGACGCGCTGCGCCTGTCGGCCGTGCCGGTCGATGAGGGCGAGCAGGGGGTCACGGTCGTCGCCAGTGACCCCCG
CAAGCGGGAAGACATTGAAGCGCTGGTGGGCCGGTCCGTGCAGATCGTGCTGGCCAAACCCCGCGACATTGAGATGCTCA
TTGAGCGCTTCTACCCGCAGCGCGGCCGGCTGGGTGAGCAGATGGTGCAGCAGGGCACCCTGTCGCGCGAGCAGCTGCGC
GAGGCGCTGCAGGTGCAGGCCCGGGAGGGCCGCGTCAAGGCGCTGGGGGAGGTGATCGTGAGCCTGGGCTTCGCGAACGC
TGAGGAAATCGACAACGCCCTGCAGAAACAGCATGCCGGAGGCGGGCGTCTGGAGGACACGCTGGTGCAGTCCGGCAAGC
TCTCCCCGGAGATGCTGGCGCGCTCCCTGGCGGCGCAGCTGGGGTACGAGTTCCTGGACCCCGTGCAGAACCCGCCGGAC
AGCAAGGTGGCGCTGCTGATTCCCGAAACGACCGCGCGCCGCTACAGCGTGGTGCCCGTCAGGCTGCAGGGCGAGGCGCT
GGTCGTGGCGATGAAAGACCCGCGCAACGTGTTCGCGCTGGACGACCTGAAGCTCATCAGCGGGCGCGAGATCATCCCGG
CGGTCATGGCGGAAAAAGACATCATCCGTCTGATCGAACGGTACTTCGGCAACCGCGACATGGCCGACCTGAACCAGAAA
CTGGTGCAGGAAAGCCGCCAGCGTGAAAACGCCAGCAAACGCCAGGACGACATGGACCTCTCGGCCGGCCTGGACGACAA
CGCCGTGGTCCGCGTGGTGGACAACATCATCCGCGAGGCGGCGTTGCAGGAAGCCAGCGACATTCACATCGAACCCACCG
AGATGTCCCTGCGCGTACGCTACCGCGTGGACGGCGTGCTGCGCGAACAGAACGAACTGCCCAAGGGCAGCTCGCAGAGC
ATCCTGGCGCGCATCAAGATCATGGGCAGCCTCGACATCAGCGAGCGCCGCATCCCGCAGGACGGCCGCATCCGGTTCAA
GAAGGGCAGCATCGACCTCGACCTGCGTCTCTCCACGCTGCCCACCGTGTACGGCGAGAAGGCCGTGATGCGCCTGCTGC
AAAAAGCCAGCAACATTCCCGAGGTGGAACAGCTGGGGTTCAGTGAACACAACTACCAGCGGTACCTTGACACCATCCAC
AAACCCAACGGCATCTTCCTGGTGACCGGCCCCACGGGCTCGGGCAAATCCTTCACGTCCTTTTCCACCCTCAAGCGCAT
CGCCGTGCCGGAGAAGAACACCACCACCATTGAGGACCCGGTCGAGTACGAGATTCCCGGCATCATCCAGTCGCAGGTGA
ACCCGGTGGCCGGCATGACCTTCGCCCGCGCCCTGCGCGCCTTCCTGCGTCAGGACCCGGACATCATCTTCGTGGGCGAG
ATCCGCGACACCGAAACCGCCAAGATCGCCGTGGAAGCTGCCCTGACCGGCCACCTGGTGCTGGCCACGCTGCACACCAA
CGACGCGCCGGGCGCCATCGTGCGCCTGGAGGAAATGGGCGTCGAGCACTTCAACATCGGCGCCGCCGTGGTGGGCGTGG
TCGCGCAGCGCCTGGTGCGCAAGGTCTGCCCGGACTGCAAGGCCCCCACCAACGCCGACCCGGACGTGCTGCGCCGCCTG
GGCATCACTGAACGCGACCTGAAAGGCGCGCAGCTGATGCGCGGCGCCGGCTGCAACCGCTGCGGCGGCACCGGGTACAA
GGGCCGCATGGGTATCCACGAACTGATGGTCATTGACGAGCCGCTGCGCGTTGCAATCGGCAGCGGCAAGAACGCCACCG
AGATCACCCAGGTGGCCACCGAGCAGAGCGGCATGAAAACCCTCCGTCAGGACGGCATCGAGAAGGCACTTCTGGGCATC
ACCACCCTGGAAGAGGTTCTGGCCGTCACCAGCAAGTAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (516-781)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (199-302)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (43-146)

• Type II secretion system (T2SS), protein E, N-terminal domain (MshEN) (368-472)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilB	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	76.233	100	0.762
pilF	Thermus thermophilus HB27	54.404	100	0.547