Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   LAJ19_RS13790 Genome accession   NZ_CP083455
Coordinates   2852427..2853722 (+) Length   431 a.a.
NCBI ID   WP_225476309.1    Uniprot ID   -
Organism   Deinococcus taeanensis strain TS293     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2847427..2858722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAJ19_RS13770 (LAJ19_13770) - 2847500..2848288 (-) 789 WP_225476305.1 enoyl-ACP reductase -
  LAJ19_RS13775 (LAJ19_13775) pgeF 2848426..2849157 (+) 732 WP_225476306.1 peptidoglycan editing factor PgeF -
  LAJ19_RS13780 (LAJ19_13780) - 2849154..2849660 (+) 507 WP_225476307.1 YqeG family HAD IIIA-type phosphatase -
  LAJ19_RS13785 (LAJ19_13785) pilB 2849711..2852389 (+) 2679 WP_225476308.1 type II/IV secretion system protein Machinery gene
  LAJ19_RS13790 (LAJ19_13790) pilT 2852427..2853722 (+) 1296 WP_225476309.1 type IV pilus twitching motility protein PilT Machinery gene
  LAJ19_RS13795 (LAJ19_13795) - 2853799..2855103 (-) 1305 WP_225476310.1 thymidine phosphorylase -

Sequence

Protein


Download         Length: 431 a.a.        Molecular weight: 46666.06 Da        Isoelectric Point: 7.1474

>NTDB_id=606002 LAJ19_RS13790 WP_225476309.1 2852427..2853722(+) (pilT) [Deinococcus taeanensis strain TS293]
MTQPAADITDILRFAADKGASDVIITVGLSPQFKLQGVYDSHGFAELAPTETRKLMYSMMNEKQQRTFEERRELDFSFAL
GEKARFRVNAFMQRGNVGGVLRLIPTKIKSAQEMGLPANVIEIANSPRGLVLVTGPTGSGKSTTLAAMIDHINATKKLHI
MTIEDPIEFMHTHKQSIINQREVGSDTMSFNDALRAVLRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAPE
SIDRIVDVFPEEQQEQIRVQLANNLVAVMTQQLLPRLDGQGRILAYELLIANAAVRSLIREGKTYQITSVMQTGAREGMV
TMDAFLANLYRRRIISFDTGVERAVDSKEFARLANDPGLGTPGGAPSMPSGYGQAPVQGFGAAVTPAQGGYASGRNDFGR
GGPDARTTSTPDTSTPGTPTPSTPTPGYGRR

Nucleotide


Download         Length: 1296 bp        

>NTDB_id=606002 LAJ19_RS13790 WP_225476309.1 2852427..2853722(+) (pilT) [Deinococcus taeanensis strain TS293]
ATGACCCAGCCCGCCGCCGACATTACTGACATCCTGCGTTTCGCCGCCGACAAGGGCGCGTCCGACGTGATCATCACGGT
GGGGCTCTCCCCGCAGTTCAAGCTGCAGGGCGTGTACGACTCGCATGGCTTCGCGGAACTCGCGCCGACCGAGACCCGCA
AGCTGATGTACTCCATGATGAACGAAAAGCAGCAGCGCACCTTCGAGGAGCGGCGCGAACTGGACTTCTCGTTCGCGCTC
GGCGAGAAGGCCCGTTTCCGCGTGAACGCCTTCATGCAGCGCGGCAACGTGGGCGGGGTGCTGCGCCTGATTCCCACGAA
GATCAAGAGCGCCCAGGAGATGGGCCTGCCTGCCAACGTCATCGAGATCGCCAACTCCCCGCGCGGTCTGGTGCTCGTCA
CCGGCCCCACCGGCTCCGGGAAATCCACGACGCTGGCGGCAATGATCGACCACATCAACGCCACCAAGAAACTGCACATC
ATGACGATCGAGGACCCGATCGAGTTCATGCACACGCACAAGCAGTCGATCATCAACCAGCGCGAGGTGGGGTCCGACAC
CATGAGCTTCAACGACGCGCTGCGCGCCGTGCTGCGCCAGGCGCCCGACGTGATTCTCGTGGGCGAAATGCGTGACTACG
AAACCATCAAGGCCGCCGTGACCGCCGCCGAAACCGGCCACCTGGTCATGGGCACCCTGCACACCAACAGCGCCCCGGAA
TCCATCGACCGTATCGTGGACGTGTTCCCGGAAGAGCAGCAGGAGCAGATCCGCGTGCAGCTCGCCAACAACCTCGTGGC
CGTTATGACCCAGCAGCTGCTGCCGCGCCTGGACGGGCAGGGCCGCATCCTGGCGTACGAACTGCTGATCGCCAACGCCG
CCGTGCGCTCCCTGATCCGCGAGGGGAAAACCTACCAGATCACCAGCGTCATGCAGACCGGCGCGCGCGAGGGCATGGTC
ACCATGGACGCCTTCCTGGCGAACCTGTACCGCCGCCGCATCATCTCCTTCGACACCGGCGTTGAACGCGCCGTGGACAG
CAAGGAATTCGCGCGCCTGGCCAACGACCCCGGCCTGGGCACCCCGGGCGGCGCGCCCAGCATGCCCAGCGGATACGGGC
AGGCGCCCGTGCAGGGCTTCGGCGCGGCCGTAACGCCCGCCCAGGGCGGCTACGCCTCAGGCCGCAACGATTTCGGCCGT
GGCGGCCCGGATGCCCGCACCACCAGCACCCCGGACACCAGCACGCCCGGCACGCCCACGCCCAGCACGCCCACGCCAGG
GTACGGCCGCCGGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(15-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

77.525

91.879

0.712
  pilT Neisseria meningitidis 8013

51.437

80.742

0.415
  pilT Neisseria gonorrhoeae MS11

51.163

79.814

0.408
  pilT Pseudomonas stutzeri DSM 10701

50.291

79.814

0.401
  pilT Acinetobacter baylyi ADP1

51.032

78.654

0.401
  pilT Pseudomonas aeruginosa PAK

50.296

78.422

0.394
  pilT Legionella pneumophila strain Lp02

49.128

79.814

0.392
  pilT Legionella pneumophila strain ERS1305867

49.128

79.814

0.392
  pilT Acinetobacter baumannii strain A118

51.212

76.566

0.392
  pilT Acinetobacter baumannii D1279779

51.212

76.566

0.392
  pilT Acinetobacter nosocomialis M2

51.212

76.566

0.392
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.632

76.334

0.371
  pilT Vibrio cholerae strain A1552

48.632

76.334

0.371