Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | HK81_RS23210 | Genome accession | NC_021848 |
| Coordinates | 3303164..3303742 (+) | Length | 192 a.a. |
| NCBI ID | WP_020904549.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus O1:K33 str. CDC_K4557 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3298164..3308742
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK81_RS23195 (M636_23705) | oxyR | 3298487..3299395 (+) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
| HK81_RS23200 (M636_23710) | - | 3299451..3302021 (-) | 2571 | WP_020904548.1 | penicillin-binding protein 1A | - |
| HK81_RS23205 (M636_23715) | pilM | 3302164..3303180 (+) | 1017 | WP_005496568.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| HK81_RS23210 (M636_23720) | pilN | 3303164..3303742 (+) | 579 | WP_020904549.1 | PilN domain-containing protein | Machinery gene |
| HK81_RS23215 (M636_23725) | pilO | 3303735..3304328 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| HK81_RS23220 (M636_23730) | pilP | 3304318..3304833 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| HK81_RS23225 (M636_23735) | pilQ | 3304865..3306613 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| HK81_RS23230 (M636_23740) | aroK | 3306802..3307320 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| HK81_RS23235 (M636_23745) | aroB | 3307352..3308452 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22468.94 Da Isoelectric Point: 6.6554
>NTDB_id=60589 HK81_RS23210 WP_020904549.1 3303164..3303742(+) (pilN) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MLYRINLLPWRENQREEHRRRFVGLVVLSVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLSVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEQKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=60589 HK81_RS23210 WP_020904549.1 3303164..3303742(+) (pilN) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGAGCGTCATGGTGGCGTTGGGGATTCAGTGGGGTGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGAGCGTCATGGTGGCGTTGGGGATTCAGTGGGGTGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCTCGGCTAGCAACCATGCTCGATAACATGGAGCGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGCAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
82.812 |
100 |
0.828 |
| pilN | Vibrio cholerae strain A1552 |
62.431 |
94.271 |
0.589 |