Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   HK81_RS11050 Genome accession   NC_021848
Coordinates   665249..666688 (+) Length   479 a.a.
NCBI ID   WP_005482419.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 660249..671688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS11030 (M636_11320) rsxB 660761..661357 (-) 597 WP_005480813.1 electron transport complex subunit RsxB -
  HK81_RS11035 (M636_11325) rsxA 661361..661939 (-) 579 WP_005380762.1 electron transport complex subunit RsxA -
  HK81_RS11045 (M636_11335) uvrB 662929..664959 (+) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  HK81_RS11050 (M636_11340) luxO 665249..666688 (+) 1440 WP_005482419.1 sigma-54 dependent transcriptional regulator Regulator
  HK81_RS11055 (M636_11345) luxU 666691..667029 (+) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  HK81_RS11060 (M636_11350) - 667106..667999 (-) 894 WP_017447831.1 YvcK family protein -
  HK81_RS11065 (M636_11355) moaA 668295..669284 (+) 990 WP_005461510.1 GTP 3',8-cyclase MoaA -
  HK81_RS11070 (M636_11360) moaB 669387..669899 (+) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  HK81_RS11075 (M636_11365) moaC 669926..670405 (+) 480 WP_005488247.1 cyclic pyranopterin monophosphate synthase MoaC -
  HK81_RS11080 (M636_11370) moaD 670402..670659 (+) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  HK81_RS11085 (M636_11375) moaE 670661..671116 (+) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53442.12 Da        Isoelectric Point: 6.1989

>NTDB_id=60568 HK81_RS11050 WP_005482419.1 665249..666688(+) (luxO) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFI
GSSQTMQQVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAA
NDRQGAAELADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRL
YVIPLHLPPLRERGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDML
PPPLNQPLDRPSVSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=60568 HK81_RS11050 WP_005482419.1 665249..666688(+) (luxO) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTCCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTATCGA
TACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGACTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGG
TCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAAATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATC
GGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACCATTGACTCTGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGG
TGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGCCATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCA
TCAACTGTGCAGCCATACCTAAAGACTTAATTGAAAGTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCA
AATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGTGGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTT
ACAAACCAAATTATTGCGATTCATCCAAACCGGTACGTTCCAAAAAGTAGGCTCTTCAAAAATGAAGAGTGTGGACGTGC
GCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAGAAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTA
TACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAACGTGGTGAAGATGTGATTGAAATTGCATACTCACTGTTAGGCTA
CATGTCCCACGAAGAGGGCAAAAACTTTGTTCGTTTTTCTCAAGAAGTGATTGATCGCTTTAACAGTTATGAGTGGCCGG
GTAACGTCCGACAACTACAAAACGTACTACGCAATATCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTG
CCACCGCCGCTGAATCAACCGTTAGATAGGCCATCTGTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGAT
CATGCCGTTATGGATGACAGAGAAAATGGCGATTGAGCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTG
GGTATCTTGATGTCAGTCCGTCAACGATTTACCGCAAACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(160-325)

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Response regulator receiver domain (Response_reg)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

85.217

96.033

0.818

Multiple sequence alignment