Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   HK81_RS09100 Genome accession   NC_021848
Coordinates   235108..235722 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 230108..240722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS09090 (M636_09365) aceF 231398..233284 (+) 1887 WP_015297248.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  HK81_RS09095 (M636_09370) lpdA 233553..234980 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  HK81_RS09100 (M636_09375) opaR 235108..235722 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  HK81_RS09105 (M636_09380) hpt 236041..236571 (+) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  HK81_RS09110 (M636_09385) can 236646..237314 (-) 669 WP_005462578.1 carbonate dehydratase -
  HK81_RS09115 (M636_09390) - 237598..239268 (+) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  HK81_RS09120 (M636_09395) - 239521..240438 (+) 918 WP_020835400.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=60566 HK81_RS09100 WP_005479697.1 235108..235722(-) (opaR) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=60566 HK81_RS09100 WP_005479697.1 235108..235722(-) (opaR) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTTGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment