Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K7G90_RS09830 Genome accession   NZ_CP083396
Coordinates   2100997..2101335 (-) Length   112 a.a.
NCBI ID   WP_224045953.1    Uniprot ID   -
Organism   Pasteurella canis strain HL1500     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2095997..2106335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G90_RS09805 (K7G90_001960) serA 2096640..2097872 (-) 1233 WP_224045948.1 phosphoglycerate dehydrogenase -
  K7G90_RS09810 (K7G90_001961) rpiA 2097899..2098558 (-) 660 WP_224045949.1 ribose-5-phosphate isomerase RpiA -
  K7G90_RS09815 (K7G90_001962) hemW 2098700..2099851 (-) 1152 WP_224045950.1 radical SAM family heme chaperone HemW -
  K7G90_RS09820 (K7G90_001963) - 2099852..2100175 (-) 324 WP_224045951.1 YbjQ family protein -
  K7G90_RS09825 (K7G90_001964) rdgB 2100264..2100869 (-) 606 WP_224045952.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K7G90_RS09830 (K7G90_001965) comE1/comEA 2100997..2101335 (-) 339 WP_224045953.1 helix-hairpin-helix domain-containing protein Machinery gene
  K7G90_RS09835 (K7G90_001966) ispH 2101522..2102466 (-) 945 WP_049214670.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K7G90_RS09840 (K7G90_001967) lspA 2102476..2102985 (-) 510 WP_049214669.1 signal peptidase II -
  K7G90_RS09845 (K7G90_001968) ileS 2103092..2105902 (-) 2811 WP_191135153.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12093.85 Da        Isoelectric Point: 6.2126

>NTDB_id=605639 K7G90_RS09830 WP_224045953.1 2100997..2101335(-) (comE1/comEA) [Pasteurella canis strain HL1500]
MTFNSVIIAILTLSSIFTSTNLFANSTNTTNTPLIAVDHVSTESVTGIGKININNATAAELQHDLIGVGAKKAEAIIQYR
EAHGPFTKIEQLLEVQGIGNVILEKNKDRLIF

Nucleotide


Download         Length: 339 bp        

>NTDB_id=605639 K7G90_RS09830 WP_224045953.1 2100997..2101335(-) (comE1/comEA) [Pasteurella canis strain HL1500]
ATGACATTTAATTCAGTTATTATTGCCATTTTAACTTTAAGCTCAATTTTTACTAGCACAAATTTATTCGCTAATTCAAC
AAACACTACAAACACACCACTTATCGCAGTAGACCATGTTTCAACTGAATCTGTTACAGGTATAGGAAAAATCAATATAA
ATAATGCGACAGCTGCAGAATTACAACATGACTTAATTGGAGTTGGTGCTAAAAAAGCAGAAGCGATTATCCAGTATCGT
GAAGCACACGGTCCTTTCACAAAGATAGAGCAATTACTTGAAGTACAGGGTATTGGTAATGTTATTTTAGAAAAAAATAA
AGATCGTTTAATTTTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.509
  comEA/comE1 Glaesserella parasuis strain SC1401

45.098

91.071

0.411