Detailed information NTG0605601

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: LAE74_RS03290
• Genome accession: NZ_CP083395
• Coordinates: 615553..616971 (-)
• Length: 472 a.a.
• NCBI ID: WP_002779315.1
• Uniprot ID: -
• Organism: Campylobacter coli strain C203018
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 610553..621971

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAE74_RS03265 (LAE74_03240)	-	610902..611666 (+)	765	WP_002784060.1	TSUP family transporter	-
LAE74_RS03270 (LAE74_03245)	ctsF	611663..612838 (-)	1176	WP_002781160.1	type II secretion system F family protein	Machinery gene
LAE74_RS03275 (LAE74_03250)	ctsE	612825..614387 (-)	1563	WP_002779312.1	GspE/PulE family protein	Machinery gene
LAE74_RS03280 (LAE74_03255)	-	614380..614967 (-)	588	WP_002810825.1	CDC27 family protein	-
LAE74_RS03285 (LAE74_03260)	ctsP	614964..615560 (-)	597	WP_002779314.1	ATP-binding protein	Machinery gene
LAE74_RS03290 (LAE74_03265)	ctsD	615553..616971 (-)	1419	WP_002779315.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
LAE74_RS03295 (LAE74_03270)	ctsR	616949..617260 (-)	312	WP_002779316.1	hypothetical protein	Machinery gene
LAE74_RS03300 (LAE74_03275)	nifJ	617284..620844 (-)	3561	WP_002779317.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
LAE74_RS03305 (LAE74_03280)	-	620948..621586 (-)	639	WP_002826026.1	HAD family hydrolase	-

Sequence

Protein

• Length: 472 a.a.
• Molecular weight: 53513.05 Da
• Isoelectric Point: 6.5150

>NTDB_id=605601 LAE74_RS03290 WP_002779315.1 615553..616971(-) (ctsD) [Campylobacter coli strain C203018]
MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELASYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIF
KLFIEEQDLAYKFDGKILKISALQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNF
NIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKES
SKGTENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVEN
NQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFIITPSIVDNTHIPSLRELGFKYNE

Nucleotide

• Length: 1419 bp

>NTDB_id=605601 LAE74_RS03290 WP_002779315.1 615553..616971(-) (ctsD) [Campylobacter coli strain C203018]
ATGATAAGATTAATATTTATTAAAATTCTATTTTTTACCAATCTTATTTATGCCATGGAATGCCAAAAACGCTTATTTGA
TATAAATATCAATGAAGATCTAAGCATAGAAGAAAGCCTAAAAGAACTTGCTAGTTATTGCTCTTTTAGCGTGGTAATTA
AAGATACAATTGCTAAGGAAAAACTAAAAGCCATTCAAAGCAGTATCAATATCCACCAAATGAGTTTAGATGAAATTTTT
AAACTTTTTATAGAAGAACAGGACCTAGCTTATAAATTTGATGGCAAGATTTTAAAAATTTCTGCTTTGCAAACTAGAAT
TTTTAAAATCAACTATATTACTTCAGTTAGAGAAGGACAAAGCATAACCAAGGCTTCGGTGGATTCTAAGCCAAGGCAAA
GTGAGTATTATAGCGCTTTTGAAGATAATGAAGATAATATGATTAAAAGTATGGAAAAATTTGACTTTTGGCAAAATATA
GAAAAAGAGATTATGATTTTGCTTAGCTCCTCACATGAAAACTATGATATAAAAGCACCTATAGTCAATCCAAATGCTGG
GCTTGTTATCGTTACTGGAACGCATTCTCAGCTTCAACGCGTAAAAGCTTATTTACAAAAGCTTGAAAGTCGTCTTAAAA
AACAAGTTATTATAGATGTGAGTATACTTGCTGTAAATCTTAATAAAAATCATTCTAGTGGGATCAATTGGCAAAATTTC
AATATAGGATTAAATTCTCAAACAAGCGATAATACAAATTCTTTTATGCAAATACAAAATGGTCAAGGTTTTGTTAAAAA
TTTGGGTTTAAGAGCGAATTTGAATTTTGATTCCATTGTCAATTTTTTATCTCAAAGTGGAAAAACCAGTGTTTTATCTA
ATCCTAAATTAATGGCTTTAAACAATCAACAAGCCATTATTTCCATAGGCGATACTGTGAATTATCAAGTAAAAGAAAGC
TCTAAAGGTACTGAAAATGGCACAACTGTAAGTGAGAGTTATAGTAATTATTCTATTTTCATAGGAATTTTGCTTAATAT
TTTGCCCGAAATTTCTGATGATGGAAAAATCATGCTTAGGATCAATCCAAGTCTAAGCGACTTTAAATACCCAGAGGACA
ATAAAAGACAAAAAGAACCCCGCACTATCGCGCCTGATACAATTCAAAAAAAGCTTTCAAGTGTGGTGCAAGTAGAAAAT
AATCAAACTTTAATTTTGGGCGGACTTATCTCTCATAATCGCTCACAAAATGATAATTCTGTTAATTTTTTATCTAAAAT
TCCCATTTTGGGTTCTTTATTTAGAAGTGAAGATGAAAATTCCAATATCACAGAAATTGTTTTTATCATCACCCCAAGCA
TAGTAGATAATACACATATACCTAGTCTTAGGGAGTTAGGATTTAAGTACAATGAATAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (283-456)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	80.72	100	0.807