Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   LAE74_RS03295 Genome accession   NZ_CP083395
Coordinates   616949..617260 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain C203018     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 611949..622260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE74_RS03275 (LAE74_03250) ctsE 612825..614387 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  LAE74_RS03280 (LAE74_03255) - 614380..614967 (-) 588 WP_002810825.1 CDC27 family protein -
  LAE74_RS03285 (LAE74_03260) ctsP 614964..615560 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  LAE74_RS03290 (LAE74_03265) ctsD 615553..616971 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  LAE74_RS03295 (LAE74_03270) ctsR 616949..617260 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  LAE74_RS03300 (LAE74_03275) nifJ 617284..620844 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  LAE74_RS03305 (LAE74_03280) - 620948..621586 (-) 639 WP_002826026.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=605602 LAE74_RS03295 WP_002779316.1 616949..617260(-) (ctsR) [Campylobacter coli strain C203018]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=605602 LAE74_RS03295 WP_002779316.1 616949..617260(-) (ctsR) [Campylobacter coli strain C203018]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTATAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553