Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K9N54_RS25165 Genome accession   NZ_CP083362
Coordinates   1729968..1731149 (-) Length   393 a.a.
NCBI ID   WP_025791219.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1724968..1736149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS25150 (K9N54_25015) - 1726270..1726818 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  K9N54_RS25155 (K9N54_25020) - 1726905..1727522 (-) 618 WP_005498603.1 HAD family phosphatase -
  K9N54_RS25160 (K9N54_25025) cqsS 1727842..1729890 (+) 2049 WP_021450907.1 response regulator Regulator
  K9N54_RS25165 (K9N54_25030) cqsA 1729968..1731149 (-) 1182 WP_025791219.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K9N54_RS25170 (K9N54_25035) ylqF 1731504..1732448 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  K9N54_RS25175 (K9N54_25040) - 1732738..1733475 (-) 738 WP_005454086.1 EAL domain-containing protein -
  K9N54_RS25180 (K9N54_25045) - 1733655..1735898 (-) 2244 WP_196952923.1 M9 family metallopeptidase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43840.14 Da        Isoelectric Point: 6.4984

>NTDB_id=605401 K9N54_RS25165 WP_025791219.1 1729968..1731149(-) (cqsA) [Vibrio parahaemolyticus strain 20-082E4]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTISPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=605401 K9N54_RS25165 WP_025791219.1 1729968..1731149(-) (cqsA) [Vibrio parahaemolyticus strain 20-082E4]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGATGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCAGTGTATAGCACGATTGGCACAATCTC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTGGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGATTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGCGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575