Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   K9N54_RS25160 Genome accession   NZ_CP083362
Coordinates   1727842..1729890 (+) Length   682 a.a.
NCBI ID   WP_021450907.1    Uniprot ID   A0A7T1FLM4
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722842..1734890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS25140 (K9N54_25005) dcuC 1723153..1724520 (-) 1368 WP_005454288.1 anaerobic C4-dicarboxylate transporter DcuC -
  K9N54_RS25145 (K9N54_25010) - 1724874..1725998 (-) 1125 WP_025604515.1 fatty acid desaturase -
  K9N54_RS25150 (K9N54_25015) - 1726270..1726818 (+) 549 WP_005481267.1 GNAT family N-acetyltransferase -
  K9N54_RS25155 (K9N54_25020) - 1726905..1727522 (-) 618 WP_005498603.1 HAD family phosphatase -
  K9N54_RS25160 (K9N54_25025) cqsS 1727842..1729890 (+) 2049 WP_021450907.1 response regulator Regulator
  K9N54_RS25165 (K9N54_25030) cqsA 1729968..1731149 (-) 1182 WP_025791219.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K9N54_RS25170 (K9N54_25035) ylqF 1731504..1732448 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  K9N54_RS25175 (K9N54_25040) - 1732738..1733475 (-) 738 WP_005454086.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78273.08 Da        Isoelectric Point: 5.8750

>NTDB_id=605400 K9N54_RS25160 WP_021450907.1 1727842..1729890(+) (cqsS) [Vibrio parahaemolyticus strain 20-082E4]
MDSIRKVYEYAEPNLTLVGWMGFIGFPLYYFVWDFMFPQSYENLPLRLFCSALFFGIIFRNRLSSSWRKYVHVYYQITIT
TCLPFFFFYMLLMNDWSNVWVMSFMSAIFLHILLVHVTRVMFAQTFAGIGLATFFAWIAKGFHLDITMDWTHVPIFLFIY
VFGNMFYFRNQVEHEAKVSLAKSFGAGIAHEMRNPLSGLCTSIDVIQSVLPNKKAMGEKDQYVMSGEDVTLLREVSEDAM
NIIHSGNETIDLLLTSIDENRVSRSSFKRYSAQSVVEKAIESFSYKRSTDRFAISFDARSEFDFLGSDTLLKYVMYNLFK
NAFHHRSSDEFHIHVSMQSNDTVNQIVVTDNGSGIAPDVIRHIFQDFYTTGKSGSYGLGLPFCKKVMRSFGGNIKCISQP
GEWSQFTLTFPPITSDTVTEIKDELTKMKSILLVSNQDIIVQKMADISRFMGFDVTVLDVKSVFKKKEYEFEFDLIFVDV
ESLDVLENQLDRIESLLSFTEARVVYLFEHKPAQRAKKAGHDPIWVETQAWLLNTKATIERLLYDSTYISSTLPSAPLDK
SIKRTIMVVDDNESLRKFTAMLLEKQGFEVVQKEDGQQALDTLEKENIDLILMDIEMPIMDGVEASRRIRNSEKPYASVP
IIAHTGDSSPVTLDKIGSSGMSDFIVKPADKNRLFDKIANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=605400 K9N54_RS25160 WP_021450907.1 1727842..1729890(+) (cqsS) [Vibrio parahaemolyticus strain 20-082E4]
ATGGATTCGATACGTAAGGTATATGAGTACGCAGAGCCCAATTTAACATTAGTTGGTTGGATGGGATTTATTGGCTTCCC
GCTCTACTACTTCGTTTGGGACTTCATGTTCCCGCAATCCTATGAAAACTTGCCGCTACGTTTGTTCTGTTCCGCACTGT
TTTTTGGCATCATTTTTCGTAACCGTTTGTCGTCATCATGGCGAAAGTACGTGCACGTCTATTATCAAATAACGATTACG
ACCTGTTTACCTTTCTTCTTTTTTTATATGTTACTCATGAATGATTGGTCCAATGTTTGGGTGATGTCATTCATGTCGGC
TATTTTCCTGCATATTTTGTTGGTTCATGTCACAAGGGTCATGTTTGCTCAGACGTTCGCTGGTATTGGTCTAGCGACGT
TTTTTGCGTGGATAGCGAAAGGCTTTCATCTCGATATCACAATGGATTGGACGCATGTGCCGATATTTTTGTTTATTTAT
GTGTTTGGCAACATGTTCTATTTCCGAAATCAGGTCGAGCATGAAGCAAAAGTATCGCTCGCTAAGTCGTTTGGCGCTGG
TATTGCTCATGAAATGCGTAATCCACTCAGTGGCTTATGTACGTCGATAGATGTTATTCAGTCTGTCTTGCCTAACAAAA
AGGCGATGGGCGAAAAAGATCAGTATGTGATGAGTGGTGAAGACGTAACCTTGCTCCGTGAAGTGAGCGAAGATGCGATG
AACATTATTCATTCAGGCAACGAGACAATCGATTTATTGCTCACATCGATTGATGAAAACCGCGTATCTCGCTCTTCCTT
CAAAAGATATTCTGCTCAATCGGTGGTTGAAAAAGCCATCGAGAGTTTCAGTTATAAACGTTCGACAGACAGGTTCGCGA
TCTCATTCGATGCAAGAAGTGAGTTTGACTTTTTGGGTAGCGATACATTGTTAAAGTACGTCATGTATAACTTGTTTAAG
AACGCATTTCATCATCGCAGCTCAGATGAGTTTCATATTCATGTGAGTATGCAGAGTAATGACACGGTCAACCAAATTGT
AGTGACGGACAACGGCTCAGGTATCGCGCCAGATGTAATTCGACATATCTTTCAGGACTTCTATACCACAGGTAAATCGG
GCAGTTATGGCCTTGGACTACCGTTCTGTAAGAAAGTCATGCGTTCATTTGGCGGTAATATTAAGTGCATTTCCCAGCCG
GGAGAGTGGTCACAGTTTACGTTGACTTTTCCGCCTATCACATCAGATACGGTAACGGAAATTAAAGACGAACTGACCAA
AATGAAATCAATTTTATTGGTCAGTAATCAAGACATTATCGTGCAAAAAATGGCAGATATTAGTCGCTTCATGGGATTTG
ATGTCACCGTTTTAGATGTAAAAAGCGTCTTTAAAAAGAAAGAATACGAGTTTGAATTTGACCTGATATTTGTCGATGTG
GAAAGCCTTGATGTTTTAGAAAACCAATTAGACAGAATCGAATCGTTACTTTCATTTACTGAAGCGCGTGTGGTGTATCT
TTTTGAACACAAACCTGCACAACGAGCTAAAAAAGCCGGCCATGACCCGATTTGGGTAGAGACTCAAGCGTGGTTGCTAA
ACACTAAAGCTACGATTGAACGTTTGCTTTATGATTCCACTTATATCTCGTCAACCTTGCCGTCTGCTCCTTTAGATAAA
TCCATCAAACGAACCATCATGGTTGTGGATGATAACGAGTCTCTGCGTAAGTTTACGGCGATGTTGCTAGAGAAGCAGGG
ATTTGAAGTGGTACAAAAGGAAGATGGTCAGCAAGCATTAGACACTCTTGAAAAAGAAAATATCGATCTGATTTTGATGG
ATATTGAGATGCCAATCATGGACGGAGTAGAAGCGTCGCGACGTATCCGTAACTCAGAAAAGCCGTATGCATCTGTGCCG
ATTATTGCGCATACGGGAGACAGTTCTCCTGTGACGCTAGATAAAATTGGCTCATCCGGCATGTCCGACTTTATCGTTAA
ACCCGCTGATAAGAATCGCCTTTTCGATAAAATTGCTAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T1FLM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

48.83

100

0.49