Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   HK86_RS14575 Genome accession   NC_021847
Coordinates   3117989..3118603 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 3112989..3123603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS14555 (M634_14935) - 3113271..3114188 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  HK86_RS14560 (M634_14940) - 3114445..3116115 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  HK86_RS14565 (M634_14945) can 3116399..3117067 (+) 669 WP_005462578.1 carbonate dehydratase -
  HK86_RS14570 (M634_14950) hpt 3117140..3117670 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  HK86_RS14575 (M634_14955) opaR 3117989..3118603 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  HK86_RS14580 (M634_14960) lpdA 3118731..3120158 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  HK86_RS14585 (M634_14965) aceF 3120427..3122340 (-) 1914 WP_020841255.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=60540 HK86_RS14575 WP_005479697.1 3117989..3118603(+) (opaR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=60540 HK86_RS14575 WP_005479697.1 3117989..3118603(+) (opaR) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCTGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment