Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   K9N54_RS13740 Genome accession   NZ_CP083361
Coordinates   2861665..2862279 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2856665..2867279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS13720 (K9N54_13605) - 2856948..2857865 (-) 918 WP_024702450.1 ABC transporter ATP-binding protein -
  K9N54_RS13725 (K9N54_13610) - 2858119..2859789 (-) 1671 WP_025792850.1 SulP family inorganic anion transporter -
  K9N54_RS13730 (K9N54_13615) can 2860073..2860741 (+) 669 WP_005462578.1 carbonate dehydratase -
  K9N54_RS13735 (K9N54_13620) hpt 2860816..2861346 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  K9N54_RS13740 (K9N54_13625) opaR 2861665..2862279 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  K9N54_RS13745 (K9N54_13630) lpdA 2862407..2863834 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  K9N54_RS13750 (K9N54_13635) aceF 2864104..2865990 (-) 1887 WP_025792849.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=605372 K9N54_RS13740 WP_005479697.1 2861665..2862279(+) (opaR) [Vibrio parahaemolyticus strain 20-082E4]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=605372 K9N54_RS13740 WP_005479697.1 2861665..2862279(+) (opaR) [Vibrio parahaemolyticus strain 20-082E4]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAGCATGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCACTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701