Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   K7G89_RS10520 Genome accession   NZ_CP083262
Coordinates   2214190..2214528 (-) Length   112 a.a.
NCBI ID   WP_223667839.1    Uniprot ID   -
Organism   Pasteurella canis strain HL268     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2209190..2219528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G89_RS10495 (K7G89_002089) serA 2209833..2211065 (-) 1233 WP_049214675.1 phosphoglycerate dehydrogenase -
  K7G89_RS10500 (K7G89_002090) rpiA 2211092..2211751 (-) 660 WP_191135159.1 ribose-5-phosphate isomerase RpiA -
  K7G89_RS10505 (K7G89_002091) hemW 2211893..2213044 (-) 1152 WP_223667837.1 radical SAM family heme chaperone HemW -
  K7G89_RS10510 (K7G89_002092) - 2213045..2213368 (-) 324 WP_049214672.1 YbjQ family protein -
  K7G89_RS10515 (K7G89_002093) rdgB 2213457..2214062 (-) 606 WP_223667838.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  K7G89_RS10520 (K7G89_002094) comE1/comEA 2214190..2214528 (-) 339 WP_223667839.1 helix-hairpin-helix domain-containing protein Machinery gene
  K7G89_RS10525 (K7G89_002095) ispH 2214715..2215659 (-) 945 WP_049214670.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K7G89_RS10530 (K7G89_002096) lspA 2215669..2216178 (-) 510 WP_223667840.1 signal peptidase II -
  K7G89_RS10535 (K7G89_002097) ileS 2216285..2219095 (-) 2811 WP_223667841.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12116.89 Da        Isoelectric Point: 6.4786

>NTDB_id=605200 K7G89_RS10520 WP_223667839.1 2214190..2214528(-) (comE1/comEA) [Pasteurella canis strain HL268]
MTFNSVIIAILTLSSIFTSTNLFANSTNTTNTPLIAVDHVSTESVTGIGKININHATAAELQHDLIGVGAKKAEAIIQYR
EAHGPFTKIEQLLEVQGIGNVILEKNKDRLIF

Nucleotide


Download         Length: 339 bp        

>NTDB_id=605200 K7G89_RS10520 WP_223667839.1 2214190..2214528(-) (comE1/comEA) [Pasteurella canis strain HL268]
ATGACATTTAATTCAGTTATTATTGCCATTTTAACTTTAAGCTCAATTTTTACTAGCACAAATTTATTCGCTAATTCAAC
AAACACTACAAACACACCACTTATCGCAGTAGACCATGTTTCAACTGAATCTGTTACAGGTATAGGAAAAATCAATATAA
ATCATGCGACAGCTGCCGAATTACAACATGACTTAATTGGAGTTGGTGCTAAAAAAGCAGAAGCGATTATCCAGTATCGT
GAAGCACACGGTCCTTTCACAAAGATAGAGCAATTACTTGAAGTACAGGGTATTGGTAATGTTATTTTAGAAAAAAATAA
AGATCGTTTAATCTTCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

50

100

0.509
  comEA/comE1 Glaesserella parasuis strain SC1401

45.098

91.071

0.411