Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | HK86_RS00215 | Genome accession | NC_021847 |
| Coordinates | 39137..39715 (-) | Length | 192 a.a. |
| NCBI ID | WP_020839763.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus O1:Kuk str. FDA_R31 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 34137..44715
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK86_RS00190 (M634_00200) | aroB | 34427..35527 (-) | 1101 | WP_020839761.1 | 3-dehydroquinate synthase | - |
| HK86_RS00195 (M634_00205) | aroK | 35559..36077 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| HK86_RS00200 (M634_00210) | pilQ | 36266..38014 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| HK86_RS00205 (M634_00215) | pilP | 38046..38561 (-) | 516 | WP_015297395.1 | pilus assembly protein PilP | Machinery gene |
| HK86_RS00210 (M634_00220) | pilO | 38551..39144 (-) | 594 | WP_020839762.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| HK86_RS00215 (M634_00225) | pilN | 39137..39715 (-) | 579 | WP_020839763.1 | PilN domain-containing protein | Machinery gene |
| HK86_RS00220 (M634_00230) | pilM | 39699..40715 (-) | 1017 | WP_020839764.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| HK86_RS00225 (M634_00235) | - | 40858..43428 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| HK86_RS00230 (M634_00240) | oxyR | 43485..44393 (-) | 909 | WP_005465160.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22452.98 Da Isoelectric Point: 6.9945
>NTDB_id=60517 HK86_RS00215 WP_020839763.1 39137..39715(-) (pilN) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISELDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISELDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=60517 HK86_RS00215 WP_020839763.1 39137..39715(-) (pilN) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGTGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACGACGTACATTTCCGAACTAGATAAGCGGATAGAAGCGATGAAAATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGTGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACGACGTACATTTCCGAACTAGATAAGCGGATAGAAGCGATGAAAATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTATATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTCAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |