Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | HK86_RS00205 | Genome accession | NC_021847 |
| Coordinates | 38046..38561 (-) | Length | 171 a.a. |
| NCBI ID | WP_015297395.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus O1:Kuk str. FDA_R31 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 33046..43561
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK86_RS00190 (M634_00200) | aroB | 34427..35527 (-) | 1101 | WP_020839761.1 | 3-dehydroquinate synthase | - |
| HK86_RS00195 (M634_00205) | aroK | 35559..36077 (-) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| HK86_RS00200 (M634_00210) | pilQ | 36266..38014 (-) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| HK86_RS00205 (M634_00215) | pilP | 38046..38561 (-) | 516 | WP_015297395.1 | pilus assembly protein PilP | Machinery gene |
| HK86_RS00210 (M634_00220) | pilO | 38551..39144 (-) | 594 | WP_020839762.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| HK86_RS00215 (M634_00225) | pilN | 39137..39715 (-) | 579 | WP_020839763.1 | PilN domain-containing protein | Machinery gene |
| HK86_RS00220 (M634_00230) | pilM | 39699..40715 (-) | 1017 | WP_020839764.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| HK86_RS00225 (M634_00235) | - | 40858..43428 (+) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18901.02 Da Isoelectric Point: 10.4654
>NTDB_id=60515 HK86_RS00205 WP_015297395.1 38046..38561(-) (pilP) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=60515 HK86_RS00205 WP_015297395.1 38046..38561(-) (pilP) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAGGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGCAATAACGGTAAGGTCACGCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
83.041 |
100 |
0.83 |
| pilP | Vibrio cholerae strain A1552 |
57.558 |
100 |
0.579 |