Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K3A98_RS03635 Genome accession   NZ_CP083259
Coordinates   744721..745116 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL25274     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 739721..750116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3A98_RS03605 (K3A98_000716) - 740946..741350 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  K3A98_RS03610 (K3A98_000717) - 741723..741816 (+) 94 Protein_710 hypothetical protein -
  K3A98_RS03615 (K3A98_000718) - 741948..742181 (+) 234 WP_000384523.1 DUF1146 family protein -
  K3A98_RS03620 (K3A98_000719) murA 742292..743557 (+) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K3A98_RS03625 (K3A98_000720) fabZ 743591..744031 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  K3A98_RS03630 (K3A98_000721) - 744087..744527 (-) 441 WP_000846751.1 YwpF-like family protein -
  K3A98_RS03635 (K3A98_000722) ssb 744721..745116 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  K3A98_RS03640 (K3A98_000723) sceD 745505..746200 (+) 696 WP_000752011.1 lytic transglycosylase SceD -
  K3A98_RS03645 (K3A98_000724) tenA 746588..747277 (+) 690 WP_000396067.1 thiaminase II -
  K3A98_RS03650 (K3A98_000725) thiD 747270..748100 (+) 831 WP_000594949.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  K3A98_RS03655 (K3A98_000726) thiM 748084..748875 (+) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  K3A98_RS03660 (K3A98_000727) thiE 748877..749518 (+) 642 WP_223671414.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=605140 K3A98_RS03635 WP_000932694.1 744721..745116(+) (ssb) [Staphylococcus aureus strain HL25274]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=605140 K3A98_RS03635 WP_000932694.1 744721..745116(+) (ssb) [Staphylococcus aureus strain HL25274]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATACTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992