Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   K8Z53_RS13080 Genome accession   NZ_CP083238
Coordinates   2437496..2437942 (-) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 2709     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2432496..2442942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS13055 (K8Z53_12915) - 2433102..2433977 (-) 876 WP_142782154.1 transporter substrate-binding domain-containing protein -
  K8Z53_RS13060 (K8Z53_12920) - 2434161..2434712 (+) 552 WP_061575968.1 NAD(P)H-dependent oxidoreductase -
  K8Z53_RS13065 (K8Z53_12925) - 2434809..2435535 (+) 727 Protein_2539 AAA family ATPase -
  K8Z53_RS13070 (K8Z53_12930) - 2435605..2437041 (+) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  K8Z53_RS13075 (K8Z53_12935) nin/comJ 2437080..2437478 (-) 399 WP_142782153.1 competence protein ComJ Regulator
  K8Z53_RS13080 (K8Z53_12940) nucA/comI 2437496..2437942 (-) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  K8Z53_RS13085 (K8Z53_12945) - 2438310..2439570 (-) 1261 Protein_2543 methyl-accepting chemotaxis protein -
  K8Z53_RS13090 (K8Z53_12950) - 2439686..2440426 (-) 741 WP_003178817.1 ribonuclease YeeF family protein -
  K8Z53_RS13095 (K8Z53_12955) - 2440830..2442884 (+) 2055 WP_017473996.1 hydantoinase/oxoprolinase family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=605097 K8Z53_RS13080 WP_009330244.1 2437496..2437942(-) (nucA/comI) [Bacillus licheniformis strain 2709]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=605097 K8Z53_RS13080 WP_009330244.1 2437496..2437942(-) (nucA/comI) [Bacillus licheniformis strain 2709]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642