Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   NLY76_RS10405 Genome accession   NZ_CP100430
Coordinates   2145465..2146559 (+) Length   364 a.a.
NCBI ID   WP_002936177.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2140465..2151559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS10380 (NLY76_10380) pgsA 2140984..2141523 (-) 540 WP_024375811.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NLY76_RS10385 (NLY76_10385) rodZ 2141533..2142390 (-) 858 WP_044757423.1 cytoskeleton protein RodZ -
  NLY76_RS10390 (NLY76_10390) - 2142472..2143755 (-) 1284 WP_024387841.1 pitrilysin family protein -
  NLY76_RS10395 (NLY76_10395) - 2143752..2145005 (-) 1254 WP_044757421.1 pitrilysin family protein -
  NLY76_RS10400 (NLY76_10400) yaaA 2145079..2145462 (+) 384 WP_002936175.1 S4 domain-containing protein YaaA -
  NLY76_RS10405 (NLY76_10405) recF 2145465..2146559 (+) 1095 WP_002936177.1 DNA replication/repair protein RecF Machinery gene
  NLY76_RS10410 (NLY76_10410) guaB 2146828..2148309 (-) 1482 WP_015647590.1 IMP dehydrogenase -
  NLY76_RS10415 (NLY76_10415) trpS 2148541..2149566 (-) 1026 WP_044676431.1 tryptophan--tRNA ligase -
  NLY76_RS10420 (NLY76_10420) - 2149921..2150793 (+) 873 WP_015647591.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42217.34 Da        Isoelectric Point: 7.2235

>NTDB_id=605052 NLY76_RS10405 WP_002936177.1 2145465..2146559(+) (recF) [Streptococcus suis strain LSS42]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=605052 NLY76_RS10405 WP_002936177.1 2145465..2146559(+) (recF) [Streptococcus suis strain LSS42]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATTAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTATCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.083

99.176

0.695
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442