Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   NLY76_RS05660 Genome accession   NZ_CP100430
Coordinates   1173487..1176753 (-) Length   1088 a.a.
NCBI ID   WP_044770191.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168487..1181753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS05650 (NLY76_05650) plsY 1169179..1169823 (+) 645 WP_015646902.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  NLY76_RS05655 (NLY76_05655) rexA 1169834..1173487 (-) 3654 WP_044770190.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  NLY76_RS05660 (NLY76_05660) rexB 1173487..1176753 (-) 3267 WP_044770191.1 ATP-dependent nuclease subunit B Machinery gene
  NLY76_RS05665 (NLY76_05665) - 1176858..1177022 (-) 165 WP_014638044.1 hypothetical protein -
  NLY76_RS05670 (NLY76_05670) obgE 1177397..1178710 (-) 1314 WP_032504098.1 GTPase ObgE -
  NLY76_RS05675 (NLY76_05675) - 1178916..1179044 (-) 129 WP_002943675.1 DUF4044 domain-containing protein -
  NLY76_RS05680 (NLY76_05680) - 1179216..1179599 (-) 384 WP_032504100.1 hypothetical protein -
  NLY76_RS05685 (NLY76_05685) uvrC 1179759..1181528 (-) 1770 WP_044770192.1 excinuclease ABC subunit UvrC Machinery gene

Sequence

Protein


Download         Length: 1088 a.a.        Molecular weight: 124553.68 Da        Isoelectric Point: 5.1250

>NTDB_id=605023 NLY76_RS05660 WP_044770191.1 1173487..1176753(-) (rexB) [Streptococcus suis strain LSS42]
MKLVYTDIRNPLTQYLTDTAAEFTKEGKRVFYIAPNSLSFEMERKVLEYLPEQATFDIIVTRFGQLARYLMIDRKESAQP
LDDVGLAMIFFRVLSQFEDGDLKVYGRLQTDFGFINQLVALYKELQRANMSILDLEAMDSPDKQADLVKIFLAVTDILSK
EGFEHQSKLAQLTSLVETGQLDEQLKNIVLVVDGFSRFSAEEESLVSALNERVSEILIGVYASKKAVQATYAEGNVYQAN
VDFLRQLSAQFQTKATYIGQEPVLDSIGKFSKNMEAYYDYSGTMIDLTPADQEKIQLWEVVNQKEEVEQVATAIRQHVHQ
GARYKDILLLLGDVDSYKLQIGKIFDKYDIPYYFGKAEEMSHHPLVHFVESLERLRRYRFRAEDLFNLLKSGLYASISQK
ELDLFESYILFADMKGQAAFSRAFVANSRADYDAEVIKEKRLVYDLTVLEPLRAKIMEPLNQLFKAGPQSGVALLEKFMA
FLEAIDLPKNMEKMSRNLSEVEQEKEEQVWKSFTHILENFHQIFGKEKLKMDDFLAILQAGMQASHYRTIPATVDVVNVK
SYDLIEPHTAKYVYAIGMGQSNFPKVAKNTSLLTEEEMEKVNLVSSSSSHFDLVSRENIKKNHAAMMSLLNSATEQLVIS
TPQIYNEGEDSLSPYIKILQKMGLKSEERGRIKTLSPQDIGHYKSLLSRLIESERPSLDNEEWEGQRAFWTVLVRHLKKK
LESQGIEIPTITGEITSKQLSDETLAALYPEDKPLNLSASSLTNFYNNQYLYFVRNVLRLREQESIHPTAFQHGLFLHRI
FERVVMDQSELDFDQKVDKAILRTRDEAEFAMFYNQDADARYTEEVLDKIARSSATILRDNDLVEIDGQEKSFRQDKALV
FDLQNGKSVHVNGTIDRLDTLQINQAVGVVDYKSSDQSFSVGDFYNGLKPQLVTYLAALQELDETKDKPVFGAMYLHLQD
PIIKLKDTKNLGQLEGAANTSLVYKGLFLKEESLGLNHFYQTRNQLYTEDEFAVLLNHNQELYKQAAKDILDGRFAINPY
TKDGRSVAGDQLKAITGFEADRHMGMARRLVKEAKRQDWMERMKGGQD

Nucleotide


Download         Length: 3267 bp        

>NTDB_id=605023 NLY76_RS05660 WP_044770191.1 1173487..1176753(-) (rexB) [Streptococcus suis strain LSS42]
ATGAAATTAGTCTATACAGATATTCGCAATCCTCTGACGCAGTATTTAACGGATACCGCAGCAGAATTTACTAAGGAAGG
TAAGCGAGTTTTTTATATTGCTCCAAACTCCCTATCCTTTGAGATGGAGCGCAAGGTCTTGGAATACCTGCCTGAACAGG
CAACTTTTGATATTATCGTGACCCGTTTTGGGCAATTGGCCCGCTATTTGATGATTGATAGGAAAGAATCAGCTCAACCG
CTGGATGATGTTGGTCTGGCCATGATTTTCTTTCGTGTTCTATCGCAATTTGAAGATGGCGACTTGAAAGTCTATGGTCG
TTTGCAGACAGATTTTGGTTTCATTAACCAGCTAGTTGCTTTATATAAAGAATTGCAACGGGCAAATATGTCTATTTTGG
ACTTGGAAGCCATGGACTCACCAGATAAGCAGGCTGATTTGGTAAAGATTTTTCTGGCTGTAACAGACATTTTGTCCAAA
GAAGGCTTTGAGCATCAGTCTAAGTTGGCACAGCTGACTAGCTTGGTAGAAACTGGTCAGTTGGATGAGCAGTTGAAGAA
CATTGTGCTGGTGGTAGACGGATTTTCTCGTTTTTCGGCAGAAGAAGAATCTTTAGTAAGTGCTTTAAATGAACGAGTGT
CGGAAATCCTGATTGGTGTATATGCCAGCAAGAAAGCTGTGCAAGCCACCTATGCGGAAGGCAACGTATATCAAGCCAAC
GTTGACTTTTTACGTCAGTTATCAGCGCAGTTCCAGACTAAGGCAACTTATATTGGTCAAGAGCCAGTCTTGGACAGTAT
CGGTAAATTTTCAAAGAATATGGAAGCCTATTATGACTACAGCGGGACTATGATAGACTTGACTCCAGCAGACCAAGAAA
AAATCCAACTCTGGGAGGTTGTTAACCAAAAAGAAGAAGTGGAGCAGGTTGCGACTGCAATTCGTCAGCATGTGCATCAA
GGGGCTCGCTATAAAGACATCTTGTTGCTCTTGGGTGATGTGGATAGCTACAAGTTGCAGATTGGCAAGATTTTTGACAA
GTATGATATTCCTTACTATTTCGGCAAGGCAGAAGAGATGAGTCATCATCCGTTGGTCCATTTTGTGGAGTCCTTGGAAC
GCTTACGTCGCTATCGTTTCCGCGCGGAAGACCTGTTCAATCTCCTCAAATCTGGTTTGTACGCCAGCATTTCCCAAAAG
GAGCTGGACCTATTTGAGTCTTACATCCTTTTTGCGGATATGAAGGGGCAGGCTGCTTTTTCGAGGGCTTTTGTGGCCAA
TAGCAGAGCTGACTATGATGCTGAAGTCATCAAGGAGAAAAGGCTTGTCTATGATTTGACTGTCTTGGAACCTCTACGTG
CTAAGATTATGGAACCTTTGAACCAGCTGTTTAAGGCTGGACCACAATCTGGAGTTGCCTTGCTTGAGAAATTTATGGCA
TTTTTGGAGGCAATTGATCTTCCTAAAAATATGGAAAAAATGTCTCGAAATTTGAGCGAGGTAGAGCAAGAAAAAGAAGA
GCAGGTCTGGAAAAGTTTTACCCATATTCTAGAGAATTTTCATCAGATTTTCGGAAAAGAAAAGTTGAAAATGGATGATT
TTCTGGCTATTTTACAGGCTGGAATGCAGGCCAGTCATTATCGTACCATTCCTGCAACAGTAGATGTGGTCAATGTCAAA
TCCTATGATTTGATTGAGCCGCACACTGCAAAGTATGTTTATGCTATCGGAATGGGCCAGTCCAATTTTCCAAAAGTTGC
TAAGAATACCAGTCTATTGACAGAAGAAGAGATGGAAAAAGTCAATCTTGTCTCATCTAGTTCCTCACATTTCGATTTGG
TCAGCCGAGAGAATATCAAGAAGAACCATGCTGCTATGATGTCTCTACTTAATTCTGCGACGGAACAGTTAGTTATTTCC
ACGCCTCAGATTTATAACGAAGGTGAGGATAGTCTCTCCCCTTATATCAAGATTCTCCAAAAAATGGGGTTGAAATCCGA
AGAACGTGGTCGGATTAAAACACTTAGTCCACAAGATATCGGTCACTACAAGAGTCTCTTATCCCGTTTGATTGAGTCAG
AAAGACCATCTCTTGATAATGAAGAATGGGAAGGGCAGAGGGCCTTTTGGACAGTCTTGGTTCGCCATTTGAAGAAGAAA
TTGGAGTCGCAAGGCATTGAAATTCCGACCATTACTGGTGAAATTACTTCTAAACAACTTTCAGATGAAACCTTGGCTGC
TTTATATCCAGAGGATAAGCCGCTCAATCTTTCAGCATCCAGCTTGACCAATTTCTACAATAACCAATATCTTTACTTTG
TCCGTAATGTTCTTCGCTTGCGGGAACAGGAATCCATCCATCCGACTGCCTTTCAGCATGGTTTGTTCTTGCATCGGATT
TTTGAAAGAGTGGTCATGGACCAATCTGAGCTAGATTTTGATCAAAAAGTGGACAAGGCCATCCTGCGTACACGTGACGA
GGCAGAATTTGCTATGTTTTATAACCAGGATGCGGATGCTCGCTATACGGAGGAGGTGCTGGATAAGATTGCTCGTTCCA
GTGCGACTATTTTGCGGGATAATGATTTGGTGGAAATTGATGGTCAGGAAAAGAGTTTCCGCCAGGATAAGGCGCTAGTT
TTTGACCTTCAAAATGGCAAGAGTGTGCATGTAAATGGTACTATTGACCGCTTGGATACCTTACAAATCAATCAGGCTGT
CGGTGTTGTGGATTACAAGTCCAGCGACCAATCTTTTTCAGTTGGGGATTTTTATAATGGTCTCAAACCTCAGTTGGTGA
CCTACTTGGCAGCCTTACAAGAGCTGGATGAAACCAAGGATAAACCTGTTTTTGGAGCTATGTATTTGCATTTGCAGGAT
CCGATTATCAAATTAAAAGACACGAAGAATTTAGGACAGCTAGAAGGGGCTGCCAATACTAGCTTGGTTTACAAGGGGCT
TTTCTTGAAGGAGGAAAGTCTGGGGCTAAATCATTTTTATCAGACTCGCAACCAACTCTATACGGAAGATGAGTTTGCGG
TTTTATTGAACCACAACCAAGAACTCTACAAACAAGCTGCCAAGGACATCCTGGATGGTCGCTTTGCTATTAACCCTTAT
ACCAAAGATGGGCGTTCGGTGGCAGGTGATCAGCTGAAGGCAATCACTGGTTTTGAGGCGGATCGGCACATGGGCATGGC
ACGGCGGTTGGTCAAAGAGGCCAAGCGTCAAGATTGGATGGAACGAATGAAAGGAGGTCAGGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(757-1042)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

44.968

100

0.456