Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   K9O37_RS16200 Genome accession   NZ_CP083181
Coordinates   3317258..3318058 (-) Length   266 a.a.
NCBI ID   WP_188198396.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3312258..3323058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS16180 (K9O37_16110) - 3313323..3314021 (-) 699 WP_000058788.1 YfgM family protein -
  K9O37_RS16185 (K9O37_16115) hisS 3314050..3315342 (-) 1293 WP_000095254.1 histidine--tRNA ligase -
  K9O37_RS16190 (K9O37_16120) ispG 3315339..3316454 (-) 1116 WP_000572095.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  K9O37_RS16195 (K9O37_16125) - 3316476..3317267 (-) 792 WP_000405161.1 helix-turn-helix domain-containing protein -
  K9O37_RS16200 (K9O37_16130) pilF 3317258..3318058 (-) 801 WP_188198396.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  K9O37_RS16205 (K9O37_16135) rlmN 3318074..3319306 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  K9O37_RS16210 (K9O37_16140) ndk 3319429..3319860 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  K9O37_RS16215 (K9O37_16145) iscX 3319974..3320174 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  K9O37_RS16220 (K9O37_16150) - 3320274..3320825 (-) 552 WP_000669564.1 phosphatase PAP2 family protein -
  K9O37_RS16225 (K9O37_16155) - 3320850..3322148 (-) 1299 WP_000348499.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30066.37 Da        Isoelectric Point: 9.2307

>NTDB_id=605024 K9O37_RS16200 WP_188198396.1 3317258..3318058(-) (pilF) [Acinetobacter baumannii strain AB43]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKSNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQIERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=605024 K9O37_RS16200 WP_188198396.1 3317258..3318058(-) (pilF) [Acinetobacter baumannii strain AB43]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGCCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAATCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATAGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(88-134)

Tetratricopeptide repeat (TPR_16)

(149-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.462

97.744

0.718