Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   K9O37_RS08290 Genome accession   NZ_CP083181
Coordinates   1711832..1712212 (+) Length   126 a.a.
NCBI ID   WP_004738906.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB43     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1706832..1717212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS08260 (K9O37_08250) kdsB 1707735..1708496 (+) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K9O37_RS08265 (K9O37_08255) - 1708508..1709488 (+) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  K9O37_RS08270 (K9O37_08260) - 1709500..1709841 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  K9O37_RS08275 (K9O37_08265) - 1709859..1710632 (+) 774 WP_000497298.1 TatD family hydrolase -
  K9O37_RS08280 (K9O37_08270) - 1710670..1711278 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  K9O37_RS08285 (K9O37_08275) - 1711288..1711842 (+) 555 WP_000841379.1 type II secretion system protein -
  K9O37_RS08290 (K9O37_08280) xcpV 1711832..1712212 (+) 381 WP_004738906.1 type II secretion system minor pseudopilin GspI Machinery gene
  K9O37_RS08295 (K9O37_08285) xcpW 1712212..1712913 (+) 702 WP_000594574.1 type II secretion system minor pseudopilin GspJ Machinery gene
  K9O37_RS08300 (K9O37_08290) gspK 1712913..1713872 (+) 960 WP_000301477.1 type II secretion system minor pseudopilin GspK -
  K9O37_RS08305 (K9O37_08295) - 1714102..1714698 (+) 597 WP_004738911.1 6-pyruvoyl trahydropterin synthase family protein -
  K9O37_RS08310 (K9O37_08300) ung 1714749..1715462 (+) 714 WP_001177530.1 uracil-DNA glycosylase -
  K9O37_RS08315 (K9O37_08305) - 1715459..1716583 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  K9O37_RS08320 (K9O37_08310) tadA 1716590..1717093 (+) 504 WP_031946509.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13973.21 Da        Isoelectric Point: 9.8004

>NTDB_id=605017 K9O37_RS08290 WP_004738906.1 1711832..1712212(+) (xcpV) [Acinetobacter baumannii strain AB43]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISLNVQKIDLQVSLYDPDKGKVQNGITHIVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=605017 K9O37_RS08290 WP_004738906.1 1711832..1712212(+) (xcpV) [Acinetobacter baumannii strain AB43]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCTGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATAGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

98.413

100

0.984