Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   K9O37_RS01740 Genome accession   NZ_CP083181
Coordinates   371716..372534 (+) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366716..377534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS01705 (K9O37_01705) - 367298..367428 (-) 131 Protein_326 hypothetical protein -
  K9O37_RS01710 (K9O37_01710) rpoZ 367467..367745 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  K9O37_RS01715 (K9O37_01715) gmk 367818..368447 (-) 630 WP_000015937.1 guanylate kinase -
  K9O37_RS01720 (K9O37_01720) ispH 368570..369520 (+) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K9O37_RS01725 (K9O37_01725) fimU 369690..370163 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K9O37_RS01730 (K9O37_01730) pilV 370157..370717 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  K9O37_RS01735 (K9O37_01735) pilW 370718..371719 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  K9O37_RS01740 (K9O37_01740) pilX 371716..372534 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  K9O37_RS01745 (K9O37_01745) pilY1 372546..376400 (+) 3855 WP_000768954.1 PilC/PilY family type IV pilus protein Machinery gene
  K9O37_RS01750 (K9O37_01750) pilY2 376413..376895 (+) 483 WP_001046423.1 type IV pilin protein Machinery gene
  K9O37_RS01755 (K9O37_01755) pilE 376892..377317 (+) 426 WP_000788337.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=605003 K9O37_RS01740 WP_000149376.1 371716..372534(+) (pilX) [Acinetobacter baumannii strain AB43]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=605003 K9O37_RS01740 WP_000149376.1 371716..372534(+) (pilX) [Acinetobacter baumannii strain AB43]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989