Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   K9O37_RS01725 Genome accession   NZ_CP083181
Coordinates   369690..370163 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 364690..375163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS01700 (K9O37_01700) - 365153..367258 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  K9O37_RS01705 (K9O37_01705) - 367298..367428 (-) 131 Protein_326 hypothetical protein -
  K9O37_RS01710 (K9O37_01710) rpoZ 367467..367745 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  K9O37_RS01715 (K9O37_01715) gmk 367818..368447 (-) 630 WP_000015937.1 guanylate kinase -
  K9O37_RS01720 (K9O37_01720) ispH 368570..369520 (+) 951 WP_004742164.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  K9O37_RS01725 (K9O37_01725) fimU 369690..370163 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  K9O37_RS01730 (K9O37_01730) pilV 370157..370717 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  K9O37_RS01735 (K9O37_01735) pilW 370718..371719 (+) 1002 WP_000079197.1 PilW family protein Machinery gene
  K9O37_RS01740 (K9O37_01740) pilX 371716..372534 (+) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=605000 K9O37_RS01725 WP_001214065.1 369690..370163(+) (fimU) [Acinetobacter baumannii strain AB43]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=605000 K9O37_RS01725 WP_001214065.1 369690..370163(+) (fimU) [Acinetobacter baumannii strain AB43]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1