Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8Z23_RS25720 Genome accession   NZ_CP083129
Coordinates   4973547..4973831 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain NB-176     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4968547..4978831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z23_RS25705 (K8Z23_25660) rnmV 4969371..4969928 (-) 558 WP_000692841.1 ribonuclease M5 -
  K8Z23_RS25710 (K8Z23_25665) - 4970144..4970911 (-) 768 WP_000895845.1 TatD family hydrolase -
  K8Z23_RS25715 (K8Z23_25670) metG 4971078..4973060 (-) 1983 WP_000134138.1 methionine--tRNA ligase -
  K8Z23_RS25720 (K8Z23_25675) abrB 4973547..4973831 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8Z23_RS25725 (K8Z23_25680) rsmI 4973852..4974727 (-) 876 WP_016078236.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K8Z23_RS25730 (K8Z23_25685) - 4974696..4974986 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  K8Z23_RS25735 (K8Z23_25690) - 4974973..4975713 (-) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K8Z23_RS25740 (K8Z23_25695) yabA 4975796..4976146 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  K8Z23_RS25745 (K8Z23_25700) - 4976161..4976988 (-) 828 WP_000272429.1 PSP1 domain-containing protein -
  K8Z23_RS25750 (K8Z23_25705) holB 4976994..4977977 (-) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  K8Z23_RS25755 (K8Z23_25710) tmk 4978013..4978639 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=604753 K8Z23_RS25720 WP_000843036.1 4973547..4973831(+) (abrB) [Bacillus thuringiensis strain NB-176]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=604753 K8Z23_RS25720 WP_000843036.1 4973547..4973831(+) (abrB) [Bacillus thuringiensis strain NB-176]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851